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SNAPC5
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:32.4 nTPM
HPA:32.4 nTPM
GTEx:33.6 nTPM
FANTOM5:33.6 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:26.5 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA024379
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.4
Sample id Sample description nTPM
Hippocampus
nTPM: 30.8
2529 Female, age 94, left hemisphere 32.8
1855 Male, age 76, left hemisphere 31.0
1898 Male, age 80, left hemisphere 31.0
2621 Female, age 67, right hemisphere 30.5
2148 Female, age 91, left hemisphere 29.8
1911 Female, age 85, right hemisphere 29.6
Dentate gyrus
nTPM: 30.1
2528 Male, age 74, both hemispheres 30.9
1927 Female, age 91, both hemispheres 30.5
2010 Male, age 76, both hemispheres 30.0
2531 Female, age 67, both hemispheres 29.9
2246 Female, age 85, both hemispheres 29.8
2530 Female, age 94, left hemisphere 29.8
Entorhinal gyrus
nTPM: 30.5
1938 Female, age 85, left hemisphere 31.6
2764 Male, age 80, right hemisphere 30.7
1787 Male, age 76, left hemisphere 30.4
2117 Female, age 91, right hemisphere 30.4
2686 Male, age 75, right hemisphere 30.3
2613 Female, age 94, left hemisphere 29.6
Hippocampus, CA1
nTPM: 30.9
2749 Male, age 80, left hemisphere 32.5
2045 Male, age 76, both hemispheres 31.3
1873 Female, age 85, both hemispheres 30.8
2082 Female, age 91, right hemisphere 30.3
2527 Male, age 74, both hemispheres 29.7
Hippocampus, CA2
nTPM: 31.4
1940 Female, age 85, left hemisphere 32.3
2113 Female, age 91, right hemisphere 31.9
2249 Male, age 74, both hemispheres 31.9
1892 Male, age 76, both hemispheres 31.8
2437 Female, age 94, left hemisphere 30.2
1963 Male, age 80, left hemisphere 30.1
Hippocampus, CA3
nTPM: 31.1
2137 Male, age 80, left hemisphere 31.9
2436 Male, age 74, both hemispheres 31.8
2620 Female, age 94, left hemisphere 31.5
1891 Female, age 85, both hemispheres 30.8
2861 Female, age 67, both hemispheres 30.7
1867 Male, age 76, both hemispheres 29.8
Parahippocampal cortex
nTPM: 31.4
1850 Male, age 80, both hemispheres 33.1
2245 Female, age 91, both hemispheres 32.4
2250 Female, age 67, right hemisphere 32.4
2693 Female, age 94, both hemispheres 31.3
2018 Male, age 76, both hemispheres 31.2
2532 Female, age 72, left hemisphere 31.2
1933 Female, age 85, both hemispheres 31.0
2692 Male, age 74, both hemispheres 31.0
1990 Female, age 91, right hemisphere 30.7
2622 Female, age 67, right hemisphere 29.7
Perirhinal gyrus
nTPM: 32.4
1794 Male, age 80, right hemisphere 33.9
1841 Female, age 85, right hemisphere 32.8
2848 Male, age 76, right hemisphere 32.2
2521 Female, age 94, right hemisphere 31.8
1847 Female, age 91, left hemisphere 31.3
Subiculum
nTPM: 29.5
2619 Male, age 74, both hemispheres 30.5
1977 Female, age 85, both hemispheres 30.3
1901 Male, age 80, both hemispheres 29.9
2729 Female, age 91, right hemisphere 29.7
2042 Male, age 76, both hemispheres 28.8
2438 Female, age 94, left hemisphere 27.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.6
Samples: 197

Max nTPM: 98.3
Min nTPM: 15.5
Std nTPM: 11.4
Median nTPM: 31.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 98.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 75.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 69.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 64.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 61.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 61.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 58.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 58.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 58.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 57.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 55.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.6
FF:10169-103B7 60 years, female 38.7
FF:10153-102I9 76 years, female 28.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 3.2
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.7
Sample A Female 3.3
Sample B Female 2.7
Sample C Male 3.3
Sample D Male 3.3
Entorhinal cortex
nTPM: 2.9
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 3.7
Sample C Male 3.2
Sample D Male 2.8
Subiculum
nTPM: 2.9
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.8
Sample A Female 2.8
Sample B Female 3.2
Sample C Male 2.8
Sample D Male 2.8
Ventral hippocampus
nTPM: 3.0
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.7
Sample A Female 2.7
Sample B Female 3.6
Sample C Male 2.9
Sample D Male 2.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 26.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.5
Samples: 4

Max nTPM: 27.9
Min nTPM: 23.5
Sample A Male 27.5
Sample B Male 27.2
Sample C Female 27.9
Sample D Female 23.5
Hippocampal formation
nTPM: 21.6
Samples: 4

Max nTPM: 23.9
Min nTPM: 20.2
Sample A Male 23.9
Sample B Male 20.3
Sample C Female 20.2
Sample D Female 21.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
77910785 Antisense, RP_070208_04_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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