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SNAPC5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA:33.2 nTPM
GTEx:35.5 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:3.9 nTPM
Mouse:26.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.8
1827 Male, age 72, unknown 33.1
2219 Male, age 76, both hemispheres 31.4
1833 Male, age 53, unknown 31.3
1870 Female, age 42, unknown 31.2
1830 Male, age 51, unknown 30.8
2411 Female, age 72, unknown 30.8
2586 Male, age 75, left hemisphere 30.8
2666 Male, age 74, left hemisphere 30.2
2828 Female, age 72, unknown 30.1
2019 Male, age 18, unknown 28.7
Dorsal raphe nucleus
nTPM: 32.2
2047 Male, age 72, unknown 33.1
2750 Male, age 76, both hemispheres 32.5
2298 Female, age 72, unknown 32.3
1828 Male, age 53, unknown 31.7
2016 Female, age 72, unknown 31.1
Inferior colliculus
nTPM: 31.6
2849 Male, age 72, unknown 32.7
1848 Female, age 42, unknown 31.9
1890 Male, age 53, unknown 31.4
2097 Female, age 72, unknown 30.4
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Pedunculopontine tegmental nucleus
nTPM: 32.8
1921 Female, age 85, both hemispheres 33.4
2338 Male, age 61, both hemispheres 32.8
2334 Male, age 80, both hemispheres 32.1
Periaquaductal grey, anterior
nTPM: 32.1
1947 Male, age 18, unknown 35.1
1795 Male, age 51, unknown 30.8
2502 Female, age 75, unknown 30.3
Periaquaductal grey, dorsal
nTPM: 31.5
2850 Male, age 76, both hemispheres 32.5
1840 Male, age 53, unknown 32.3
2464 Female, age 72, unknown 31.4
1831 Male, age 72, unknown 29.9
Periaquaductal grey, lateral
nTPM: 30.9
2272 Male, age 74, both hemispheres 31.4
2053 Male, age 18, unknown 30.7
2140 Male, age 76, both hemispheres 30.7
Pretectal area
nTPM: 31.3
2825 Male, age 18, unknown 33.3
2667 Female, age 75, unknown 33.1
2224 Female, age 72, unknown 31.5
2273 Male, age 74, both hemispheres 31.5
1816 Male, age 51, unknown 31.3
2407 Male, age 75, both hemispheres 31.3
1817 Female, age 42, unknown 31.2
1815 Male, age 53, unknown 31.0
1944 Female, age 72, unknown 30.7
2007 Male, age 72, unknown 29.9
2316 Male, age 76, right hemisphere 29.7
Red nucleus
nTPM: 30.9
1821 Female, age 72, unknown 33.8
2588 Male, age 74, left hemisphere 31.8
2725 Female, age 75, unknown 31.7
2503 Female, age 72, unknown 31.2
1954 Female, age 42, unknown 30.9
2584 Male, age 75, left hemisphere 30.7
2823 Male, age 76, right hemisphere 30.7
1865 Male, age 51, unknown 30.6
2769 Male, age 72, unknown 30.6
1904 Male, age 53, unknown 30.3
2227 Male, age 72, unknown 30.2
2785 Male, age 18, unknown 28.1
Substantia nigra
nTPM: 31.3
1851 Male, age 51, unknown 32.6
1916 Female, age 42, unknown 32.5
2241 Male, age 72, unknown 32.5
2699 Male, age 18, unknown 32.2
2665 Male, age 74, both hemispheres 31.7
1889 Female, age 72, unknown 31.1
1941 Male, age 53, unknown 30.7
2409 Female, age 72, unknown 30.4
2590 Female, age 75, unknown 29.9
2583 Male, age 75, right hemisphere 29.6
Superior colliculus
nTPM: 31.1
1895 Male, age 76, right hemisphere 32.7
1796 Male, age 53, unknown 32.3
1839 Male, age 51, unknown 31.9
2261 Male, age 18, unknown 31.7
2668 Female, age 75, unknown 31.5
2587 Male, age 74, left hemisphere 30.9
2087 Female, age 72, unknown 30.3
2664 Male, age 75, both hemispheres 30.2
1913 Female, age 42, unknown 30.1
1995 Male, age 72, unknown 29.9
Ventral tegmental area
nTPM: 32.0
1915 Female, age 42, unknown 33.4
2223 Female, age 72, unknown 32.7
2218 Male, age 76, both hemispheres 31.6
2410 Female, age 72, unknown 31.6
2021 Male, age 53, unknown 31.4
1942 Male, age 51, unknown 31.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.5
Samples: 139

Max nTPM: 67.6
Min nTPM: 18.9
Std nTPM: 8.7
Median nTPM: 34.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 67.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 60.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 54.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 53.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 52.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 51.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 49.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 49.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 49.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 48.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.9
Pig sample Sample description nTPM
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 4.9
Min nTPM: 2.7
Sample A Female 4.6
Sample B Female 4.9
Sample C Male 3.3
Sample D Male 2.7
Periaqueductal gray
nTPM: 3.9
Samples: 3

Max nTPM: 4.2
Min nTPM: 3.8
Sample B Female 4.2
Sample C Male 3.8
Sample D Male 3.8
Substantia nigra
nTPM: 3.9
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 4.0
Sample C Male 3.7
Sample D Male 4.7
Superior colliculi
nTPM: 3.4
Samples: 4

Max nTPM: 3.6
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 3.3
Sample C Male 3.4
Sample D Male 3.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 29.3
Min nTPM: 24.8
Sample A Male 29.3
Sample B Male 25.3
Sample C Female 28.5
Sample D Female 24.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
77910785 Antisense, RP_070208_04_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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