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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.2 nTPM
HPA:17.2 nTPM
GTEx:19.0 nTPM
FANTOM5:14.2 Scaled Tags Per Million
Pig:8.7 nTPM
Mouse:15.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.0
2586 Male, age 75, left hemisphere 22.4
2666 Male, age 74, left hemisphere 19.2
2019 Male, age 18, unknown 16.7
1827 Male, age 72, unknown 16.4
2219 Male, age 76, both hemispheres 15.9
2828 Female, age 72, unknown 15.1
1833 Male, age 53, unknown 14.0
1830 Male, age 51, unknown 13.8
2411 Female, age 72, unknown 13.7
1870 Female, age 42, unknown 13.0
Dorsal raphe nucleus
nTPM: 12.7
2298 Female, age 72, unknown 14.5
1828 Male, age 53, unknown 13.2
2047 Male, age 72, unknown 13.2
2750 Male, age 76, both hemispheres 12.1
2016 Female, age 72, unknown 10.5
Inferior colliculus
nTPM: 14.8
2849 Male, age 72, unknown 17.5
1848 Female, age 42, unknown 16.1
2097 Female, age 72, unknown 13.2
1890 Male, age 53, unknown 12.4
Median raphe nucleus
nTPM: 12.3
2220 Male, age 76, midline 12.3
Pedunculopontine tegmental nucleus
nTPM: 14.7
1921 Female, age 85, both hemispheres 16.8
2334 Male, age 80, both hemispheres 16.6
2338 Male, age 61, both hemispheres 10.7
Periaquaductal grey, anterior
nTPM: 17.2
1795 Male, age 51, unknown 17.6
2502 Female, age 75, unknown 17.1
1947 Male, age 18, unknown 16.9
Periaquaductal grey, dorsal
nTPM: 12.0
1840 Male, age 53, unknown 13.9
2464 Female, age 72, unknown 13.3
1831 Male, age 72, unknown 11.7
2850 Male, age 76, both hemispheres 9.2
Periaquaductal grey, lateral
nTPM: 11.3
2272 Male, age 74, both hemispheres 11.8
2053 Male, age 18, unknown 11.7
2140 Male, age 76, both hemispheres 10.5
Pretectal area
nTPM: 16.0
2007 Male, age 72, unknown 20.9
1816 Male, age 51, unknown 20.6
1944 Female, age 72, unknown 19.0
1817 Female, age 42, unknown 18.8
1815 Male, age 53, unknown 17.4
2667 Female, age 75, unknown 15.9
2407 Male, age 75, both hemispheres 15.5
2825 Male, age 18, unknown 13.6
2224 Female, age 72, unknown 12.8
2316 Male, age 76, right hemisphere 11.8
2273 Male, age 74, both hemispheres 10.2
Red nucleus
nTPM: 12.8
2584 Male, age 75, left hemisphere 17.0
2588 Male, age 74, left hemisphere 16.9
2785 Male, age 18, unknown 16.6
2725 Female, age 75, unknown 15.7
2769 Male, age 72, unknown 12.5
1821 Female, age 72, unknown 11.8
2227 Male, age 72, unknown 11.8
1954 Female, age 42, unknown 11.0
2823 Male, age 76, right hemisphere 10.9
2503 Female, age 72, unknown 10.7
1865 Male, age 51, unknown 9.3
1904 Male, age 53, unknown 9.3
Substantia nigra
nTPM: 15.4
2665 Male, age 74, both hemispheres 22.3
1941 Male, age 53, unknown 19.7
1916 Female, age 42, unknown 17.1
1889 Female, age 72, unknown 16.9
1851 Male, age 51, unknown 15.4
2583 Male, age 75, right hemisphere 13.5
2409 Female, age 72, unknown 12.9
2590 Female, age 75, unknown 12.5
2241 Male, age 72, unknown 12.2
2699 Male, age 18, unknown 11.6
Superior colliculus
nTPM: 15.4
2664 Male, age 75, both hemispheres 18.8
1895 Male, age 76, right hemisphere 17.6
1796 Male, age 53, unknown 17.5
1839 Male, age 51, unknown 16.8
2261 Male, age 18, unknown 16.2
2087 Female, age 72, unknown 16.1
2668 Female, age 75, unknown 14.7
2587 Male, age 74, left hemisphere 13.6
1995 Male, age 72, unknown 11.7
1913 Female, age 42, unknown 11.4
Ventral tegmental area
nTPM: 12.9
2410 Female, age 72, unknown 14.5
1915 Female, age 42, unknown 14.4
2218 Male, age 76, both hemispheres 14.0
1942 Male, age 51, unknown 12.7
2021 Male, age 53, unknown 11.1
2223 Female, age 72, unknown 11.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.0
Samples: 139

Max nTPM: 60.6
Min nTPM: 7.4
Std nTPM: 7.6
Median nTPM: 17.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 60.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 47.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 37.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 36.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 32.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 30.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 30.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 29.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 29.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 28.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.2
FF:10158-103A5 76 years, female 14.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.7
Pig sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 9.1
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 7.1
Sample C Male 7.7
Sample D Male 9.1
Periaqueductal gray
nTPM: 7.8
Samples: 3

Max nTPM: 9.0
Min nTPM: 7.2
Sample B Female 7.2
Sample C Male 9.0
Sample D Male 7.3
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 10.6
Min nTPM: 4.7
Sample A Female 10.6
Sample B Female 6.1
Sample C Male 9.4
Sample D Male 4.7
Superior colliculi
nTPM: 8.7
Samples: 4

Max nTPM: 10.7
Min nTPM: 6.1
Sample A Female 8.4
Sample B Female 6.1
Sample C Male 9.5
Sample D Male 10.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.4
Samples: 4

Max nTPM: 15.9
Min nTPM: 14.8
Sample A Male 14.8
Sample B Male 15.5
Sample C Female 15.9
Sample D Female 15.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67814218 Antisense, RP_040920_01_G06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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