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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:38.6 nTPM
HPA:38.6 nTPM
GTEx:37.0 nTPM
FANTOM5:106.2 Scaled Tags Per Million
Pig:25.3 nTPM
Mouse:52.0 nTPM
Allen mouse:3.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051871
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.6
Sample id Sample description nTPM
Hippocampus
nTPM: 36.2
1855 Male, age 76, left hemisphere 41.5
1898 Male, age 80, left hemisphere 39.1
2621 Female, age 67, right hemisphere 36.2
2529 Female, age 94, left hemisphere 34.0
1911 Female, age 85, right hemisphere 33.7
2148 Female, age 91, left hemisphere 33.0
Dentate gyrus
nTPM: 37.1
2010 Male, age 76, both hemispheres 40.9
2530 Female, age 94, left hemisphere 39.5
2246 Female, age 85, both hemispheres 38.8
1927 Female, age 91, both hemispheres 37.1
2528 Male, age 74, both hemispheres 35.9
2531 Female, age 67, both hemispheres 30.0
Entorhinal gyrus
nTPM: 35.1
2613 Female, age 94, left hemisphere 38.3
1787 Male, age 76, left hemisphere 36.1
1938 Female, age 85, left hemisphere 35.6
2764 Male, age 80, right hemisphere 35.0
2686 Male, age 75, right hemisphere 33.1
2117 Female, age 91, right hemisphere 32.6
Hippocampus, CA1
nTPM: 38.6
2749 Male, age 80, left hemisphere 53.1
2045 Male, age 76, both hemispheres 40.0
1873 Female, age 85, both hemispheres 38.7
2527 Male, age 74, both hemispheres 34.0
2082 Female, age 91, right hemisphere 27.2
Hippocampus, CA2
nTPM: 36.3
1963 Male, age 80, left hemisphere 41.2
1892 Male, age 76, both hemispheres 39.6
2249 Male, age 74, both hemispheres 38.7
1940 Female, age 85, left hemisphere 36.8
2437 Female, age 94, left hemisphere 31.3
2113 Female, age 91, right hemisphere 29.9
Hippocampus, CA3
nTPM: 37.8
2137 Male, age 80, left hemisphere 46.2
1867 Male, age 76, both hemispheres 40.8
2620 Female, age 94, left hemisphere 37.8
2861 Female, age 67, both hemispheres 35.0
1891 Female, age 85, both hemispheres 33.7
2436 Male, age 74, both hemispheres 33.4
Parahippocampal cortex
nTPM: 35.5
1933 Female, age 85, both hemispheres 40.3
2245 Female, age 91, both hemispheres 39.4
2693 Female, age 94, both hemispheres 37.4
2250 Female, age 67, right hemisphere 37.3
2532 Female, age 72, left hemisphere 36.6
2018 Male, age 76, both hemispheres 33.6
2622 Female, age 67, right hemisphere 33.0
1850 Male, age 80, both hemispheres 32.8
1990 Female, age 91, right hemisphere 32.8
2692 Male, age 74, both hemispheres 32.4
Perirhinal gyrus
nTPM: 36.6
2521 Female, age 94, right hemisphere 45.0
1847 Female, age 91, left hemisphere 35.9
1794 Male, age 80, right hemisphere 35.3
1841 Female, age 85, right hemisphere 34.4
2848 Male, age 76, right hemisphere 32.4
Subiculum
nTPM: 36.6
2042 Male, age 76, both hemispheres 42.2
1901 Male, age 80, both hemispheres 40.2
1977 Female, age 85, both hemispheres 37.8
2438 Female, age 94, left hemisphere 34.3
2729 Female, age 91, right hemisphere 32.9
2619 Male, age 74, both hemispheres 32.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 37.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.0
Samples: 197

Max nTPM: 71.6
Min nTPM: 20.8
Std nTPM: 8.0
Median nTPM: 35.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 71.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 70.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 63.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 57.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 55.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 55.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 55.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 55.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 54.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 54.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 54.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 106.2
FF:10169-103B7 60 years, female 116.1
FF:10153-102I9 76 years, female 96.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.3
Samples: 4

Max nTPM: 28.3
Min nTPM: 23.2
Sample A Female 28.3
Sample B Female 24.5
Sample C Male 25.0
Sample D Male 23.2
Entorhinal cortex
nTPM: 24.7
Samples: 4

Max nTPM: 27.3
Min nTPM: 22.1
Sample A Female 24.8
Sample B Female 27.3
Sample C Male 24.7
Sample D Male 22.1
Subiculum
nTPM: 23.9
Samples: 4

Max nTPM: 27.4
Min nTPM: 21.9
Sample A Female 27.4
Sample B Female 21.9
Sample C Male 23.4
Sample D Male 22.7
Ventral hippocampus
nTPM: 24.4
Samples: 4

Max nTPM: 25.9
Min nTPM: 22.0
Sample A Female 25.4
Sample B Female 22.0
Sample C Male 25.9
Sample D Male 24.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 52.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 47.6
Samples: 4

Max nTPM: 54.2
Min nTPM: 44.6
Sample A Male 44.6
Sample B Male 54.2
Sample C Female 46.3
Sample D Female 45.1
Hippocampal formation
nTPM: 52.0
Samples: 4

Max nTPM: 56.1
Min nTPM: 47.3
Sample A Male 56.1
Sample B Male 49.2
Sample C Female 55.2
Sample D Female 47.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.4
68269068 Antisense, RP_041208_01_H07, Mouse strain C57BL/6J (56 days, male) 3.7
81599624 Antisense, RP_071127_04_H06, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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