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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni
Consensus:66.2 nTPM
HPA:66.2 nTPM
GTEx:55.1 nTPM
FANTOM5:117.5 Scaled Tags Per Million
Pig:66.7 nTPM
Mouse:66.0 nTPM
Allen mouse:1.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA014405Antibody HPA065785
Glial cells HighHigh
Neuronal cells Not detectedNot detected




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 66.2
Sample id Sample description nTPM
Hippocampus
nTPM: 45.1
1911 Female, age 85, right hemisphere 57.7
2621 Female, age 67, right hemisphere 48.9
2529 Female, age 94, left hemisphere 47.4
1898 Male, age 80, left hemisphere 40.4
1855 Male, age 76, left hemisphere 38.8
2148 Female, age 91, left hemisphere 37.3
Dentate gyrus
nTPM: 49.3
2530 Female, age 94, left hemisphere 96.3
2528 Male, age 74, both hemispheres 54.0
2010 Male, age 76, both hemispheres 40.6
2246 Female, age 85, both hemispheres 40.6
2531 Female, age 67, both hemispheres 37.3
1927 Female, age 91, both hemispheres 26.9
Entorhinal gyrus
nTPM: 49.9
2117 Female, age 91, right hemisphere 95.4
2764 Male, age 80, right hemisphere 58.6
1938 Female, age 85, left hemisphere 40.9
2613 Female, age 94, left hemisphere 37.7
1787 Male, age 76, left hemisphere 35.2
2686 Male, age 75, right hemisphere 31.9
Hippocampus, CA1
nTPM: 36.1
2527 Male, age 74, both hemispheres 50.8
1873 Female, age 85, both hemispheres 42.2
2082 Female, age 91, right hemisphere 36.2
2749 Male, age 80, left hemisphere 34.9
2045 Male, age 76, both hemispheres 16.3
Hippocampus, CA2
nTPM: 51.8
2249 Male, age 74, both hemispheres 69.3
1963 Male, age 80, left hemisphere 68.6
2437 Female, age 94, left hemisphere 54.7
2113 Female, age 91, right hemisphere 45.4
1940 Female, age 85, left hemisphere 44.0
1892 Male, age 76, both hemispheres 29.0
Hippocampus, CA3
nTPM: 31.5
1891 Female, age 85, both hemispheres 66.6
2436 Male, age 74, both hemispheres 36.3
1867 Male, age 76, both hemispheres 35.2
2137 Male, age 80, left hemisphere 21.7
2620 Female, age 94, left hemisphere 16.6
2861 Female, age 67, both hemispheres 12.8
Parahippocampal cortex
nTPM: 38.4
2532 Female, age 72, left hemisphere 62.2
2692 Male, age 74, both hemispheres 54.6
1990 Female, age 91, right hemisphere 47.7
1850 Male, age 80, both hemispheres 40.3
2245 Female, age 91, both hemispheres 39.2
1933 Female, age 85, both hemispheres 37.5
2018 Male, age 76, both hemispheres 31.9
2693 Female, age 94, both hemispheres 28.5
2250 Female, age 67, right hemisphere 27.4
2622 Female, age 67, right hemisphere 15.1
Perirhinal gyrus
nTPM: 26.1
2848 Male, age 76, right hemisphere 33.5
2521 Female, age 94, right hemisphere 29.1
1847 Female, age 91, left hemisphere 22.9
1794 Male, age 80, right hemisphere 22.8
1841 Female, age 85, right hemisphere 22.2
Subiculum
nTPM: 66.2
1901 Male, age 80, both hemispheres 84.3
2042 Male, age 76, both hemispheres 81.8
2438 Female, age 94, left hemisphere 66.9
1977 Female, age 85, both hemispheres 63.0
2619 Male, age 74, both hemispheres 52.5
2729 Female, age 91, right hemisphere 48.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 55.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 55.1
Samples: 197

Max nTPM: 183.0
Min nTPM: 4.0
Std nTPM: 38.8
Median nTPM: 43.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 183.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 182.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 169.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 154.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 146.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 139.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 138.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 136.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 136.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 130.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 128.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 117.5
FF:10153-102I9 76 years, female 148.2
FF:10169-103B7 60 years, female 86.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 66.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 66.7
Samples: 4

Max nTPM: 99.5
Min nTPM: 19.5
Sample A Female 99.5
Sample B Female 50.9
Sample C Male 96.8
Sample D Male 19.5
Entorhinal cortex
nTPM: 19.9
Samples: 4

Max nTPM: 30.3
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 30.3
Sample C Male 13.8
Sample D Male 21.5
Subiculum
nTPM: 25.0
Samples: 4

Max nTPM: 31.8
Min nTPM: 18.1
Sample A Female 23.4
Sample B Female 31.8
Sample C Male 18.1
Sample D Male 26.7
Ventral hippocampus
nTPM: 41.4
Samples: 4

Max nTPM: 68.4
Min nTPM: 20.4
Sample A Female 45.2
Sample B Female 20.4
Sample C Male 31.7
Sample D Male 68.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.0
Samples: 4

Max nTPM: 45.4
Min nTPM: 18.4
Sample A Male 45.4
Sample B Male 35.5
Sample C Female 36.7
Sample D Female 18.4
Hippocampal formation
nTPM: 66.1
Samples: 4

Max nTPM: 100.5
Min nTPM: 42.6
Sample A Male 42.6
Sample B Male 53.4
Sample C Female 100.5
Sample D Female 67.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.4
655116 Antisense, RP_040922_01_A02, Mouse strain C57BL/6J (56 days, male) 2.5
71608198 Antisense, RP_050927_01_A05, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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