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B4GAT1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.3 nTPM
HPA:97.3 nTPM
GTEx:87.3 nTPM
FANTOM5:59.5 Scaled Tags Per Million
Pig:85.7 nTPM
Mouse:80.1 nTPM
Allen mouse:8.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.7
1827 Male, age 72, unknown 90.9
2411 Female, age 72, unknown 88.5
1870 Female, age 42, unknown 78.8
2828 Female, age 72, unknown 73.6
2586 Male, age 75, left hemisphere 73.3
2219 Male, age 76, both hemispheres 72.4
1833 Male, age 53, unknown 66.1
2666 Male, age 74, left hemisphere 64.1
1830 Male, age 51, unknown 60.9
2019 Male, age 18, unknown 58.1
Dorsal raphe nucleus
nTPM: 89.8
2298 Female, age 72, unknown 139.1
2047 Male, age 72, unknown 86.8
2750 Male, age 76, both hemispheres 78.5
2016 Female, age 72, unknown 72.5
1828 Male, age 53, unknown 72.1
Inferior colliculus
nTPM: 82.9
2097 Female, age 72, unknown 108.2
1848 Female, age 42, unknown 76.4
2849 Male, age 72, unknown 74.6
1890 Male, age 53, unknown 72.3
Median raphe nucleus
nTPM: 92.6
2220 Male, age 76, midline 92.6
Pedunculopontine tegmental nucleus
nTPM: 76.4
1921 Female, age 85, both hemispheres 98.5
2334 Male, age 80, both hemispheres 78.9
2338 Male, age 61, both hemispheres 51.8
Periaquaductal grey, anterior
nTPM: 97.3
1947 Male, age 18, unknown 103.3
1795 Male, age 51, unknown 100.2
2502 Female, age 75, unknown 88.5
Periaquaductal grey, dorsal
nTPM: 85.2
1840 Male, age 53, unknown 104.3
2850 Male, age 76, both hemispheres 80.8
2464 Female, age 72, unknown 78.9
1831 Male, age 72, unknown 76.9
Periaquaductal grey, lateral
nTPM: 86.1
2272 Male, age 74, both hemispheres 88.7
2053 Male, age 18, unknown 88.3
2140 Male, age 76, both hemispheres 81.3
Pretectal area
nTPM: 90.4
2224 Female, age 72, unknown 118.5
1816 Male, age 51, unknown 102.4
2273 Male, age 74, both hemispheres 100.6
1944 Female, age 72, unknown 97.5
2667 Female, age 75, unknown 95.7
2825 Male, age 18, unknown 92.2
2007 Male, age 72, unknown 89.4
1817 Female, age 42, unknown 82.4
1815 Male, age 53, unknown 78.0
2316 Male, age 76, right hemisphere 73.8
2407 Male, age 75, both hemispheres 64.0
Red nucleus
nTPM: 60.0
2725 Female, age 75, unknown 72.3
1821 Female, age 72, unknown 65.5
2503 Female, age 72, unknown 62.0
1954 Female, age 42, unknown 61.7
2785 Male, age 18, unknown 60.6
2584 Male, age 75, left hemisphere 60.4
2227 Male, age 72, unknown 60.0
2769 Male, age 72, unknown 59.9
2588 Male, age 74, left hemisphere 58.7
1904 Male, age 53, unknown 57.7
1865 Male, age 51, unknown 51.4
2823 Male, age 76, right hemisphere 49.9
Substantia nigra
nTPM: 72.5
1889 Female, age 72, unknown 83.6
2241 Male, age 72, unknown 81.2
1916 Female, age 42, unknown 81.1
1941 Male, age 53, unknown 81.0
1851 Male, age 51, unknown 78.5
2590 Female, age 75, unknown 68.0
2665 Male, age 74, both hemispheres 66.7
2409 Female, age 72, unknown 66.2
2699 Male, age 18, unknown 60.3
2583 Male, age 75, right hemisphere 58.3
Superior colliculus
nTPM: 76.7
2261 Male, age 18, unknown 100.3
1796 Male, age 53, unknown 92.7
2087 Female, age 72, unknown 89.8
1839 Male, age 51, unknown 77.2
1895 Male, age 76, right hemisphere 74.4
2587 Male, age 74, left hemisphere 72.4
2664 Male, age 75, both hemispheres 68.3
2668 Female, age 75, unknown 66.2
1913 Female, age 42, unknown 64.3
1995 Male, age 72, unknown 61.9
Ventral tegmental area
nTPM: 83.2
1942 Male, age 51, unknown 89.0
2218 Male, age 76, both hemispheres 87.2
1915 Female, age 42, unknown 86.7
2021 Male, age 53, unknown 84.4
2410 Female, age 72, unknown 83.6
2223 Female, age 72, unknown 68.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.3
Samples: 139

Max nTPM: 269.6
Min nTPM: 23.1
Std nTPM: 43.1
Median nTPM: 78.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 269.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 237.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 202.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 182.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 180.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 171.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 170.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 169.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 167.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 161.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 159.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.5
FF:10158-103A5 76 years, female 59.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 85.7
Pig sample Sample description nTPM
Midbrain
nTPM: 85.8
Samples: 4

Max nTPM: 123.7
Min nTPM: 50.4
Sample A Female 50.4
Sample B Female 63.8
Sample C Male 123.7
Sample D Male 105.1
Periaqueductal gray
nTPM: 74.8
Samples: 3

Max nTPM: 95.7
Min nTPM: 63.0
Sample B Female 63.0
Sample C Male 95.7
Sample D Male 65.8
Substantia nigra
nTPM: 77.3
Samples: 4

Max nTPM: 112.9
Min nTPM: 32.2
Sample A Female 112.9
Sample B Female 53.6
Sample C Male 110.4
Sample D Male 32.2
Superior colliculi
nTPM: 78.4
Samples: 4

Max nTPM: 95.2
Min nTPM: 43.4
Sample A Female 94.9
Sample B Female 43.4
Sample C Male 95.2
Sample D Male 80.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 80.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.1
Samples: 4

Max nTPM: 82.4
Min nTPM: 77.8
Sample A Male 82.2
Sample B Male 78.0
Sample C Female 82.4
Sample D Female 77.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.4
77332102 Antisense, RP_070116_02_B02, Mouse strain C57BL/6J (56 days, male) 9.0
69527932 Antisense, RP_050421_02_G04, Mouse strain C57BL/6J (56 days, male) 7.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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