ABOUTMENU
HELP
NEWS
LARP7
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.2 nTPM
HPA:30.2 nTPM
GTEx:24.8 nTPM
FANTOM5:72.2 Scaled Tags Per Million
Mouse:13.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.1
1870 Female, age 42, unknown 27.4
1833 Male, age 53, unknown 27.2
2219 Male, age 76, both hemispheres 27.1
1827 Male, age 72, unknown 27.0
2666 Male, age 74, left hemisphere 27.0
2828 Female, age 72, unknown 26.8
1830 Male, age 51, unknown 26.5
2019 Male, age 18, unknown 25.1
2411 Female, age 72, unknown 25.0
2586 Male, age 75, left hemisphere 21.7
Dorsal raphe nucleus
nTPM: 26.6
2016 Female, age 72, unknown 30.0
1828 Male, age 53, unknown 29.1
2750 Male, age 76, both hemispheres 25.3
2298 Female, age 72, unknown 24.8
2047 Male, age 72, unknown 24.0
Inferior colliculus
nTPM: 26.3
2849 Male, age 72, unknown 29.3
1848 Female, age 42, unknown 26.3
2097 Female, age 72, unknown 25.3
1890 Male, age 53, unknown 24.3
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Pedunculopontine tegmental nucleus
nTPM: 26.9
2334 Male, age 80, both hemispheres 28.4
2338 Male, age 61, both hemispheres 28.4
1921 Female, age 85, both hemispheres 24.0
Periaquaductal grey, anterior
nTPM: 26.2
1947 Male, age 18, unknown 27.5
1795 Male, age 51, unknown 26.0
2502 Female, age 75, unknown 25.0
Periaquaductal grey, dorsal
nTPM: 30.2
2850 Male, age 76, both hemispheres 37.0
1831 Male, age 72, unknown 30.3
1840 Male, age 53, unknown 27.9
2464 Female, age 72, unknown 25.7
Periaquaductal grey, lateral
nTPM: 29.7
2140 Male, age 76, both hemispheres 30.9
2272 Male, age 74, both hemispheres 30.0
2053 Male, age 18, unknown 28.2
Pretectal area
nTPM: 26.7
2273 Male, age 74, both hemispheres 28.3
2667 Female, age 75, unknown 28.2
2224 Female, age 72, unknown 28.1
2316 Male, age 76, right hemisphere 27.2
2825 Male, age 18, unknown 26.9
1815 Male, age 53, unknown 26.7
1816 Male, age 51, unknown 26.6
2407 Male, age 75, both hemispheres 26.5
1817 Female, age 42, unknown 25.9
1944 Female, age 72, unknown 25.0
2007 Male, age 72, unknown 24.0
Red nucleus
nTPM: 27.1
2725 Female, age 75, unknown 32.5
1954 Female, age 42, unknown 29.8
2503 Female, age 72, unknown 29.8
2823 Male, age 76, right hemisphere 28.8
1821 Female, age 72, unknown 28.7
1865 Male, age 51, unknown 26.8
1904 Male, age 53, unknown 26.0
2227 Male, age 72, unknown 25.7
2769 Male, age 72, unknown 24.9
2785 Male, age 18, unknown 24.3
2588 Male, age 74, left hemisphere 23.9
2584 Male, age 75, left hemisphere 23.5
Substantia nigra
nTPM: 26.1
2699 Male, age 18, unknown 31.7
2409 Female, age 72, unknown 27.4
1916 Female, age 42, unknown 26.6
1941 Male, age 53, unknown 26.4
2241 Male, age 72, unknown 25.6
2590 Female, age 75, unknown 25.4
2583 Male, age 75, right hemisphere 25.1
1889 Female, age 72, unknown 24.4
2665 Male, age 74, both hemispheres 24.3
1851 Male, age 51, unknown 24.2
Superior colliculus
nTPM: 26.6
1995 Male, age 72, unknown 31.9
2587 Male, age 74, left hemisphere 29.9
1839 Male, age 51, unknown 28.7
1913 Female, age 42, unknown 28.4
1895 Male, age 76, right hemisphere 25.7
1796 Male, age 53, unknown 25.2
2261 Male, age 18, unknown 24.7
2087 Female, age 72, unknown 24.6
2664 Male, age 75, both hemispheres 24.3
2668 Female, age 75, unknown 22.5
Ventral tegmental area
nTPM: 26.7
2021 Male, age 53, unknown 28.3
2218 Male, age 76, both hemispheres 27.7
1915 Female, age 42, unknown 27.0
2223 Female, age 72, unknown 26.7
1942 Male, age 51, unknown 26.0
2410 Female, age 72, unknown 24.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.8
Samples: 139

Max nTPM: 47.8
Min nTPM: 8.8
Std nTPM: 7.0
Median nTPM: 23.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 47.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 46.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 46.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 42.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 37.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 36.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 35.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 35.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 35.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 34.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 34.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.2
FF:10158-103A5 76 years, female 72.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 13.5
Min nTPM: 12.5
Sample A Male 12.5
Sample B Male 13.0
Sample C Female 13.1
Sample D Female 13.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71022864 Antisense, RP_050719_01_F10, Mouse strain C57BL/6J (56 days, male) 0.0
68910980 Antisense, RP_050118_03_A12, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.