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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:213.8 nTPM
HPA:213.8 nTPM
GTEx:303.7 nTPM
FANTOM5:141.1 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 213.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 201.7
2586 Male, age 75, left hemisphere 211.4
1827 Male, age 72, unknown 205.8
1870 Female, age 42, unknown 205.3
2219 Male, age 76, both hemispheres 204.6
2666 Male, age 74, left hemisphere 204.0
2019 Male, age 18, unknown 199.3
2828 Female, age 72, unknown 198.9
2411 Female, age 72, unknown 198.7
1833 Male, age 53, unknown 195.4
1830 Male, age 51, unknown 193.3
Dorsal raphe nucleus
nTPM: 209.2
2298 Female, age 72, unknown 231.2
2047 Male, age 72, unknown 208.6
2750 Male, age 76, both hemispheres 206.9
1828 Male, age 53, unknown 205.4
2016 Female, age 72, unknown 193.7
Inferior colliculus
nTPM: 200.6
2097 Female, age 72, unknown 208.2
1890 Male, age 53, unknown 199.7
1848 Female, age 42, unknown 199.1
2849 Male, age 72, unknown 195.2
Median raphe nucleus
nTPM: 213.8
2220 Male, age 76, midline 213.8
Pedunculopontine tegmental nucleus
nTPM: 205.3
2334 Male, age 80, both hemispheres 212.3
1921 Female, age 85, both hemispheres 205.1
2338 Male, age 61, both hemispheres 198.6
Periaquaductal grey, anterior
nTPM: 211.2
1947 Male, age 18, unknown 215.8
1795 Male, age 51, unknown 210.8
2502 Female, age 75, unknown 207.0
Periaquaductal grey, dorsal
nTPM: 194.3
1840 Male, age 53, unknown 200.9
2850 Male, age 76, both hemispheres 194.3
1831 Male, age 72, unknown 193.2
2464 Female, age 72, unknown 188.7
Periaquaductal grey, lateral
nTPM: 195.7
2053 Male, age 18, unknown 202.6
2272 Male, age 74, both hemispheres 196.1
2140 Male, age 76, both hemispheres 188.5
Pretectal area
nTPM: 208.2
2224 Female, age 72, unknown 220.4
1816 Male, age 51, unknown 219.1
2007 Male, age 72, unknown 219.1
2667 Female, age 75, unknown 216.8
1817 Female, age 42, unknown 210.7
1944 Female, age 72, unknown 207.8
1815 Male, age 53, unknown 205.3
2316 Male, age 76, right hemisphere 202.2
2825 Male, age 18, unknown 201.7
2273 Male, age 74, both hemispheres 200.3
2407 Male, age 75, both hemispheres 187.2
Red nucleus
nTPM: 201.0
1821 Female, age 72, unknown 218.3
2503 Female, age 72, unknown 211.0
2769 Male, age 72, unknown 204.2
2227 Male, age 72, unknown 204.1
1904 Male, age 53, unknown 200.6
1954 Female, age 42, unknown 197.7
2725 Female, age 75, unknown 197.7
1865 Male, age 51, unknown 197.2
2785 Male, age 18, unknown 196.9
2588 Male, age 74, left hemisphere 196.4
2823 Male, age 76, right hemisphere 194.5
2584 Male, age 75, left hemisphere 193.2
Substantia nigra
nTPM: 208.1
1916 Female, age 42, unknown 233.0
1851 Male, age 51, unknown 223.7
1889 Female, age 72, unknown 215.2
1941 Male, age 53, unknown 209.4
2699 Male, age 18, unknown 205.3
2665 Male, age 74, both hemispheres 204.1
2583 Male, age 75, right hemisphere 201.7
2241 Male, age 72, unknown 200.8
2590 Female, age 75, unknown 198.1
2409 Female, age 72, unknown 189.9
Superior colliculus
nTPM: 201.7
1796 Male, age 53, unknown 213.3
2668 Female, age 75, unknown 209.3
2587 Male, age 74, left hemisphere 205.6
2261 Male, age 18, unknown 203.2
2664 Male, age 75, both hemispheres 201.0
2087 Female, age 72, unknown 200.5
1913 Female, age 42, unknown 198.9
1895 Male, age 76, right hemisphere 196.6
1839 Male, age 51, unknown 195.0
1995 Male, age 72, unknown 193.2
Ventral tegmental area
nTPM: 207.4
1915 Female, age 42, unknown 217.8
2218 Male, age 76, both hemispheres 217.3
2223 Female, age 72, unknown 204.5
2410 Female, age 72, unknown 204.0
1942 Male, age 51, unknown 202.9
2021 Male, age 53, unknown 198.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 303.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 303.7
Samples: 139

Max nTPM: 584.7
Min nTPM: 144.6
Std nTPM: 76.7
Median nTPM: 294.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 584.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 512.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 506.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 478.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 471.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 470.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 467.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 450.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 447.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 443.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 427.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 141.1
FF:10158-103A5 76 years, female 141.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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