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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA:9.7 nTPM
GTEx:9.6 nTPM
FANTOM5:13.3 Scaled Tags Per Million
Pig:68.8 nTPM
Mouse:36.7 nTPM
Allen mouse:3.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 9.7
Sample id Sample description nTPM
Hippocampus
nTPM: 8.7
1898 Male, age 80, left hemisphere 12.3
2529 Female, age 94, left hemisphere 10.7
1855 Male, age 76, left hemisphere 10.3
2621 Female, age 67, right hemisphere 7.3
1911 Female, age 85, right hemisphere 6.0
2148 Female, age 91, left hemisphere 5.4
Dentate gyrus
nTPM: 8.6
2530 Female, age 94, left hemisphere 14.4
2010 Male, age 76, both hemispheres 10.2
2246 Female, age 85, both hemispheres 8.0
2531 Female, age 67, both hemispheres 6.9
2528 Male, age 74, both hemispheres 6.7
1927 Female, age 91, both hemispheres 5.3
Entorhinal gyrus
nTPM: 9.2
2613 Female, age 94, left hemisphere 11.8
1787 Male, age 76, left hemisphere 11.7
2686 Male, age 75, right hemisphere 9.0
2764 Male, age 80, right hemisphere 8.9
1938 Female, age 85, left hemisphere 8.0
2117 Female, age 91, right hemisphere 5.7
Hippocampus, CA1
nTPM: 8.1
2749 Male, age 80, left hemisphere 10.9
1873 Female, age 85, both hemispheres 8.4
2082 Female, age 91, right hemisphere 7.6
2527 Male, age 74, both hemispheres 7.2
2045 Male, age 76, both hemispheres 6.3
Hippocampus, CA2
nTPM: 7.7
1963 Male, age 80, left hemisphere 10.6
2437 Female, age 94, left hemisphere 9.3
1892 Male, age 76, both hemispheres 8.7
2249 Male, age 74, both hemispheres 7.3
2113 Female, age 91, right hemisphere 5.6
1940 Female, age 85, left hemisphere 4.6
Hippocampus, CA3
nTPM: 7.3
2861 Female, age 67, both hemispheres 11.5
1867 Male, age 76, both hemispheres 7.6
2137 Male, age 80, left hemisphere 7.4
2620 Female, age 94, left hemisphere 7.3
1891 Female, age 85, both hemispheres 5.3
2436 Male, age 74, both hemispheres 4.8
Parahippocampal cortex
nTPM: 7.8
1933 Female, age 85, both hemispheres 10.9
2250 Female, age 67, right hemisphere 10.4
2622 Female, age 67, right hemisphere 9.5
2018 Male, age 76, both hemispheres 7.5
2532 Female, age 72, left hemisphere 7.5
1850 Male, age 80, both hemispheres 7.4
1990 Female, age 91, right hemisphere 7.4
2245 Female, age 91, both hemispheres 6.6
2693 Female, age 94, both hemispheres 6.2
2692 Male, age 74, both hemispheres 4.9
Perirhinal gyrus
nTPM: 9.7
2521 Female, age 94, right hemisphere 11.6
1794 Male, age 80, right hemisphere 10.3
1847 Female, age 91, left hemisphere 10.3
1841 Female, age 85, right hemisphere 9.2
2848 Male, age 76, right hemisphere 7.0
Subiculum
nTPM: 7.0
1977 Female, age 85, both hemispheres 10.7
2438 Female, age 94, left hemisphere 7.2
1901 Male, age 80, both hemispheres 7.1
2619 Male, age 74, both hemispheres 6.2
2042 Male, age 76, both hemispheres 6.0
2729 Female, age 91, right hemisphere 5.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.6
Samples: 197

Max nTPM: 20.8
Min nTPM: 3.6
Std nTPM: 3.2
Median nTPM: 9.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 20.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 19.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 18.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 17.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 16.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 16.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 16.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 15.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 15.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 15.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 15.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.3
FF:10169-103B7 60 years, female 14.6
FF:10153-102I9 76 years, female 12.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 68.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 63.6
Samples: 4

Max nTPM: 83.3
Min nTPM: 56.4
Sample A Female 83.3
Sample B Female 56.5
Sample C Male 58.1
Sample D Male 56.4
Entorhinal cortex
nTPM: 66.3
Samples: 4

Max nTPM: 77.8
Min nTPM: 53.8
Sample A Female 69.4
Sample B Female 64.2
Sample C Male 77.8
Sample D Male 53.8
Subiculum
nTPM: 60.6
Samples: 4

Max nTPM: 76.4
Min nTPM: 51.4
Sample A Female 76.4
Sample B Female 51.4
Sample C Male 55.5
Sample D Male 59.1
Ventral hippocampus
nTPM: 68.8
Samples: 4

Max nTPM: 89.8
Min nTPM: 45.8
Sample A Female 71.8
Sample B Female 45.8
Sample C Male 89.8
Sample D Male 67.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 36.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.1
Samples: 4

Max nTPM: 31.6
Min nTPM: 27.1
Sample A Male 30.3
Sample B Male 27.1
Sample C Female 31.6
Sample D Female 31.4
Hippocampal formation
nTPM: 36.7
Samples: 4

Max nTPM: 46.9
Min nTPM: 29.3
Sample A Male 29.3
Sample B Male 34.9
Sample C Female 46.9
Sample D Female 35.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.3
267 Antisense, RP_Baylor_103194, Mouse strain C57BL/6J (56 days, male) 4.9
266 Antisense, RP_Baylor_103194, Mouse strain C57BL/6J (56 days, male) 3.1
72109633 Antisense, RP_050713_02_A04, Mouse strain C57BL/6J (56 days, male) 1.7
70919752 Antisense, RP_050713_02_A04, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.