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CSRP2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.6 nTPM
HPA:56.6 nTPM
GTEx:33.7 nTPM
FANTOM5:9.9 Scaled Tags Per Million
Pig:45.8 nTPM
Mouse:5.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.0
2019 Male, age 18, unknown 55.5
1827 Male, age 72, unknown 51.9
2666 Male, age 74, left hemisphere 51.3
2828 Female, age 72, unknown 49.7
1833 Male, age 53, unknown 49.6
2411 Female, age 72, unknown 49.5
1870 Female, age 42, unknown 49.1
1830 Male, age 51, unknown 48.1
2586 Male, age 75, left hemisphere 47.7
2219 Male, age 76, both hemispheres 47.2
Dorsal raphe nucleus
nTPM: 52.3
2298 Female, age 72, unknown 60.6
2016 Female, age 72, unknown 52.8
1828 Male, age 53, unknown 52.0
2047 Male, age 72, unknown 48.0
2750 Male, age 76, both hemispheres 47.9
Inferior colliculus
nTPM: 49.4
2097 Female, age 72, unknown 50.3
1890 Male, age 53, unknown 50.2
1848 Female, age 42, unknown 49.2
2849 Male, age 72, unknown 47.9
Median raphe nucleus
nTPM: 49.3
2220 Male, age 76, midline 49.3
Pedunculopontine tegmental nucleus
nTPM: 49.8
2334 Male, age 80, both hemispheres 51.1
2338 Male, age 61, both hemispheres 50.0
1921 Female, age 85, both hemispheres 48.4
Periaquaductal grey, anterior
nTPM: 52.7
1795 Male, age 51, unknown 56.1
2502 Female, age 75, unknown 53.8
1947 Male, age 18, unknown 48.3
Periaquaductal grey, dorsal
nTPM: 54.0
2850 Male, age 76, both hemispheres 58.9
1831 Male, age 72, unknown 55.8
2464 Female, age 72, unknown 51.5
1840 Male, age 53, unknown 49.8
Periaquaductal grey, lateral
nTPM: 56.4
2272 Male, age 74, both hemispheres 59.6
2140 Male, age 76, both hemispheres 55.8
2053 Male, age 18, unknown 53.7
Pretectal area
nTPM: 56.6
2273 Male, age 74, both hemispheres 69.9
1816 Male, age 51, unknown 65.5
1944 Female, age 72, unknown 62.2
2007 Male, age 72, unknown 58.0
1815 Male, age 53, unknown 55.8
1817 Female, age 42, unknown 55.7
2224 Female, age 72, unknown 53.5
2667 Female, age 75, unknown 52.5
2407 Male, age 75, both hemispheres 51.3
2825 Male, age 18, unknown 49.4
2316 Male, age 76, right hemisphere 49.0
Red nucleus
nTPM: 49.8
2785 Male, age 18, unknown 55.8
2588 Male, age 74, left hemisphere 52.1
2725 Female, age 75, unknown 50.5
1821 Female, age 72, unknown 49.8
2503 Female, age 72, unknown 49.8
1904 Male, age 53, unknown 49.4
1954 Female, age 42, unknown 49.3
1865 Male, age 51, unknown 48.9
2823 Male, age 76, right hemisphere 48.7
2769 Male, age 72, unknown 48.0
2227 Male, age 72, unknown 47.8
2584 Male, age 75, left hemisphere 47.6
Substantia nigra
nTPM: 50.2
1889 Female, age 72, unknown 54.9
2241 Male, age 72, unknown 52.3
1851 Male, age 51, unknown 50.7
1916 Female, age 42, unknown 50.2
2665 Male, age 74, both hemispheres 50.0
2409 Female, age 72, unknown 49.9
2590 Female, age 75, unknown 49.6
1941 Male, age 53, unknown 49.5
2699 Male, age 18, unknown 48.1
2583 Male, age 75, right hemisphere 47.1
Superior colliculus
nTPM: 53.7
2087 Female, age 72, unknown 59.5
2261 Male, age 18, unknown 57.8
1995 Male, age 72, unknown 56.9
2587 Male, age 74, left hemisphere 55.9
1913 Female, age 42, unknown 53.2
2668 Female, age 75, unknown 52.8
1796 Male, age 53, unknown 52.0
2664 Male, age 75, both hemispheres 51.9
1839 Male, age 51, unknown 48.7
1895 Male, age 76, right hemisphere 47.8
Ventral tegmental area
nTPM: 49.6
2021 Male, age 53, unknown 52.1
2223 Female, age 72, unknown 49.8
2410 Female, age 72, unknown 49.7
2218 Male, age 76, both hemispheres 48.7
1915 Female, age 42, unknown 48.6
1942 Male, age 51, unknown 48.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.7
Samples: 139

Max nTPM: 106.6
Min nTPM: 8.6
Std nTPM: 15.0
Median nTPM: 29.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 106.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 76.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 70.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 67.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 65.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 62.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 62.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 61.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 61.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 60.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 58.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.9
FF:10158-103A5 76 years, female 9.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.8
Pig sample Sample description nTPM
Midbrain
nTPM: 43.4
Samples: 4

Max nTPM: 97.4
Min nTPM: 22.1
Sample A Female 97.4
Sample B Female 28.3
Sample C Male 25.7
Sample D Male 22.1
Periaqueductal gray
nTPM: 45.8
Samples: 3

Max nTPM: 52.8
Min nTPM: 36.7
Sample B Female 36.7
Sample C Male 52.8
Sample D Male 47.8
Substantia nigra
nTPM: 44.1
Samples: 4

Max nTPM: 56.3
Min nTPM: 28.4
Sample A Female 56.3
Sample B Female 47.1
Sample C Male 44.6
Sample D Male 28.4
Superior colliculi
nTPM: 31.8
Samples: 4

Max nTPM: 34.3
Min nTPM: 28.1
Sample A Female 33.9
Sample B Female 34.3
Sample C Male 30.7
Sample D Male 28.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.0
Samples: 4

Max nTPM: 6.3
Min nTPM: 3.9
Sample A Male 4.7
Sample B Male 5.0
Sample C Female 3.9
Sample D Female 6.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73513654 Antisense, RP_051121_02_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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