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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:89.0 nTPM
HPA:89.0 nTPM
GTEx:56.3 nTPM
FANTOM5:36.2 Scaled Tags Per Million
Pig:6.0 nTPM
Mouse:42.8 nTPM
Allen mouse:8.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA068416
Glial cells Medium
Neuronal cells Low

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 89.0
Sample id Sample description nTPM
Hippocampus
nTPM: 87.0
2529 Female, age 94, left hemisphere 91.6
1898 Male, age 80, left hemisphere 88.1
2621 Female, age 67, right hemisphere 87.6
2148 Female, age 91, left hemisphere 86.1
1911 Female, age 85, right hemisphere 84.7
1855 Male, age 76, left hemisphere 84.1
Dentate gyrus
nTPM: 89.0
2010 Male, age 76, both hemispheres 97.8
2530 Female, age 94, left hemisphere 88.4
1927 Female, age 91, both hemispheres 87.5
2528 Male, age 74, both hemispheres 87.1
2531 Female, age 67, both hemispheres 86.9
2246 Female, age 85, both hemispheres 86.5
Entorhinal gyrus
nTPM: 85.2
2117 Female, age 91, right hemisphere 88.6
1787 Male, age 76, left hemisphere 88.3
2686 Male, age 75, right hemisphere 85.3
2764 Male, age 80, right hemisphere 84.8
1938 Female, age 85, left hemisphere 83.0
2613 Female, age 94, left hemisphere 81.4
Hippocampus, CA1
nTPM: 88.0
2045 Male, age 76, both hemispheres 91.6
2749 Male, age 80, left hemisphere 90.8
2527 Male, age 74, both hemispheres 86.8
2082 Female, age 91, right hemisphere 85.8
1873 Female, age 85, both hemispheres 85.2
Hippocampus, CA2
nTPM: 86.4
1963 Male, age 80, left hemisphere 88.5
2113 Female, age 91, right hemisphere 86.1
2249 Male, age 74, both hemispheres 86.1
1940 Female, age 85, left hemisphere 86.0
1892 Male, age 76, both hemispheres 85.8
2437 Female, age 94, left hemisphere 85.7
Hippocampus, CA3
nTPM: 88.6
1867 Male, age 76, both hemispheres 93.6
2137 Male, age 80, left hemisphere 89.9
2620 Female, age 94, left hemisphere 87.3
2861 Female, age 67, both hemispheres 87.2
2436 Male, age 74, both hemispheres 86.9
1891 Female, age 85, both hemispheres 86.4
Parahippocampal cortex
nTPM: 87.2
2018 Male, age 76, both hemispheres 99.0
2692 Male, age 74, both hemispheres 88.0
2532 Female, age 72, left hemisphere 87.3
2250 Female, age 67, right hemisphere 87.0
1990 Female, age 91, right hemisphere 86.5
2245 Female, age 91, both hemispheres 85.8
1933 Female, age 85, both hemispheres 85.3
1850 Male, age 80, both hemispheres 85.0
2622 Female, age 67, right hemisphere 85.0
2693 Female, age 94, both hemispheres 82.9
Perirhinal gyrus
nTPM: 85.1
2521 Female, age 94, right hemisphere 86.6
1794 Male, age 80, right hemisphere 85.8
1841 Female, age 85, right hemisphere 85.1
1847 Female, age 91, left hemisphere 84.6
2848 Male, age 76, right hemisphere 83.4
Subiculum
nTPM: 88.3
2042 Male, age 76, both hemispheres 96.0
1901 Male, age 80, both hemispheres 88.9
2438 Female, age 94, left hemisphere 86.7
2619 Male, age 74, both hemispheres 86.3
2729 Female, age 91, right hemisphere 86.2
1977 Female, age 85, both hemispheres 85.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 56.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 56.3
Samples: 197

Max nTPM: 292.2
Min nTPM: 25.6
Std nTPM: 27.5
Median nTPM: 49.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 292.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 175.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 155.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 144.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 143.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 132.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 119.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 108.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 100.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 100.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 97.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 36.2
FF:10153-102I9 76 years, female 48.3
FF:10169-103B7 60 years, female 24.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 6.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 5.1
Samples: 4

Max nTPM: 6.1
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 5.0
Sample C Male 6.1
Sample D Male 5.6
Entorhinal cortex
nTPM: 5.9
Samples: 4

Max nTPM: 7.0
Min nTPM: 4.5
Sample A Female 6.0
Sample B Female 6.0
Sample C Male 4.5
Sample D Male 7.0
Subiculum
nTPM: 6.0
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 6.5
Sample C Male 6.7
Sample D Male 6.7
Ventral hippocampus
nTPM: 5.6
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.5
Sample A Female 6.0
Sample B Female 6.4
Sample C Male 4.5
Sample D Male 5.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 42.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.8
Samples: 4

Max nTPM: 46.7
Min nTPM: 39.3
Sample A Male 46.7
Sample B Male 44.2
Sample C Female 39.3
Sample D Female 41.1
Hippocampal formation
nTPM: 37.8
Samples: 4

Max nTPM: 39.1
Min nTPM: 36.7
Sample A Male 36.7
Sample B Male 37.0
Sample C Female 38.4
Sample D Female 39.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.4
564779 Antisense, RP_040826_01_F06, Mouse strain C57BL/6J (56 days, male) 8.4

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