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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:122.8 nTPM
HPA:122.8 nTPM
GTEx:144.6 nTPM
FANTOM5:48.8 Scaled Tags Per Million
Pig:34.0 nTPM
Mouse:173.5 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 122.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.1
2586 Male, age 75, left hemisphere 131.7
2219 Male, age 76, both hemispheres 118.7
2666 Male, age 74, left hemisphere 118.7
1827 Male, age 72, unknown 116.1
2019 Male, age 18, unknown 113.4
2828 Female, age 72, unknown 113.4
1870 Female, age 42, unknown 108.7
2411 Female, age 72, unknown 108.3
1833 Male, age 53, unknown 106.6
1830 Male, age 51, unknown 104.9
Dorsal raphe nucleus
nTPM: 112.5
2047 Male, age 72, unknown 116.6
2750 Male, age 76, both hemispheres 116.2
2298 Female, age 72, unknown 115.3
1828 Male, age 53, unknown 113.4
2016 Female, age 72, unknown 101.2
Inferior colliculus
nTPM: 111.1
2097 Female, age 72, unknown 113.1
2849 Male, age 72, unknown 112.5
1890 Male, age 53, unknown 110.6
1848 Female, age 42, unknown 108.3
Median raphe nucleus
nTPM: 122.8
2220 Male, age 76, midline 122.8
Pedunculopontine tegmental nucleus
nTPM: 116.8
2334 Male, age 80, both hemispheres 122.8
1921 Female, age 85, both hemispheres 116.5
2338 Male, age 61, both hemispheres 111.0
Periaquaductal grey, anterior
nTPM: 120.3
1795 Male, age 51, unknown 123.5
2502 Female, age 75, unknown 119.6
1947 Male, age 18, unknown 117.6
Periaquaductal grey, dorsal
nTPM: 105.3
1840 Male, age 53, unknown 109.1
2850 Male, age 76, both hemispheres 105.2
2464 Female, age 72, unknown 103.7
1831 Male, age 72, unknown 103.2
Periaquaductal grey, lateral
nTPM: 103.3
2140 Male, age 76, both hemispheres 105.3
2053 Male, age 18, unknown 102.6
2272 Male, age 74, both hemispheres 101.9
Pretectal area
nTPM: 118.3
1816 Male, age 51, unknown 135.8
1944 Female, age 72, unknown 135.5
2007 Male, age 72, unknown 135.1
1817 Female, age 42, unknown 128.2
1815 Male, age 53, unknown 120.5
2224 Female, age 72, unknown 111.8
2667 Female, age 75, unknown 111.4
2825 Male, age 18, unknown 110.9
2316 Male, age 76, right hemisphere 106.6
2407 Male, age 75, both hemispheres 104.7
2273 Male, age 74, both hemispheres 101.1
Red nucleus
nTPM: 112.2
2725 Female, age 75, unknown 123.2
2785 Male, age 18, unknown 119.5
2588 Male, age 74, left hemisphere 116.3
2503 Female, age 72, unknown 115.6
2584 Male, age 75, left hemisphere 114.3
2227 Male, age 72, unknown 111.9
1954 Female, age 42, unknown 111.8
1821 Female, age 72, unknown 110.7
2769 Male, age 72, unknown 109.3
1904 Male, age 53, unknown 107.0
1865 Male, age 51, unknown 104.5
2823 Male, age 76, right hemisphere 102.5
Substantia nigra
nTPM: 122.3
1916 Female, age 42, unknown 146.8
1941 Male, age 53, unknown 131.0
1889 Female, age 72, unknown 127.6
1851 Male, age 51, unknown 126.9
2665 Male, age 74, both hemispheres 125.0
2409 Female, age 72, unknown 114.5
2583 Male, age 75, right hemisphere 114.5
2699 Male, age 18, unknown 114.3
2241 Male, age 72, unknown 114.0
2590 Female, age 75, unknown 108.7
Superior colliculus
nTPM: 112.1
2261 Male, age 18, unknown 120.2
1796 Male, age 53, unknown 120.1
2668 Female, age 75, unknown 119.7
2087 Female, age 72, unknown 119.1
1895 Male, age 76, right hemisphere 110.4
1839 Male, age 51, unknown 109.3
2664 Male, age 75, both hemispheres 108.1
2587 Male, age 74, left hemisphere 107.8
1913 Female, age 42, unknown 104.3
1995 Male, age 72, unknown 102.1
Ventral tegmental area
nTPM: 117.2
1915 Female, age 42, unknown 128.6
2218 Male, age 76, both hemispheres 124.5
2410 Female, age 72, unknown 117.2
1942 Male, age 51, unknown 114.5
2223 Female, age 72, unknown 112.4
2021 Male, age 53, unknown 105.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 144.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 144.6
Samples: 139

Max nTPM: 363.0
Min nTPM: 65.8
Std nTPM: 50.2
Median nTPM: 136.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 363.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 278.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 269.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 268.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 262.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 254.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 237.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 228.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 225.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 223.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 222.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.8
FF:10158-103A5 76 years, female 48.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.0
Pig sample Sample description nTPM
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 38.4
Min nTPM: 24.8
Sample A Female 24.8
Sample B Female 26.0
Sample C Male 38.4
Sample D Male 34.4
Periaqueductal gray
nTPM: 25.6
Samples: 3

Max nTPM: 32.5
Min nTPM: 21.5
Sample B Female 22.9
Sample C Male 32.5
Sample D Male 21.5
Substantia nigra
nTPM: 29.1
Samples: 4

Max nTPM: 38.9
Min nTPM: 20.4
Sample A Female 38.9
Sample B Female 22.4
Sample C Male 34.6
Sample D Male 20.4
Superior colliculi
nTPM: 34.0
Samples: 4

Max nTPM: 38.2
Min nTPM: 27.5
Sample A Female 38.1
Sample B Female 27.5
Sample C Male 38.2
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 173.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 173.5
Samples: 4

Max nTPM: 181.2
Min nTPM: 162.0
Sample A Male 181.2
Sample B Male 170.6
Sample C Female 162.0
Sample D Female 180.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
71496300 Antisense, RP_050913_04_C05, Mouse strain C57BL/6J (56 days, male) 1.1

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