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CCDC85B
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:85.2 nTPM
HPA:85.2 nTPM
GTEx:227.5 nTPM
FANTOM5:226.0 Scaled Tags Per Million
Pig:98.8 nTPM
Mouse:7.8 nTPM
Allen mouse:3.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA054415
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 85.2
Sample id Sample description nTPM
Hippocampus
nTPM: 72.4
2621 Female, age 67, right hemisphere 89.4
1898 Male, age 80, left hemisphere 86.1
2529 Female, age 94, left hemisphere 82.3
1911 Female, age 85, right hemisphere 71.0
2148 Female, age 91, left hemisphere 62.0
1855 Male, age 76, left hemisphere 43.6
Dentate gyrus
nTPM: 67.9
2530 Female, age 94, left hemisphere 117.4
1927 Female, age 91, both hemispheres 75.2
2531 Female, age 67, both hemispheres 62.7
2010 Male, age 76, both hemispheres 62.6
2528 Male, age 74, both hemispheres 48.3
2246 Female, age 85, both hemispheres 40.9
Entorhinal gyrus
nTPM: 57.8
2613 Female, age 94, left hemisphere 80.5
2764 Male, age 80, right hemisphere 72.0
1787 Male, age 76, left hemisphere 54.7
1938 Female, age 85, left hemisphere 54.5
2686 Male, age 75, right hemisphere 46.6
2117 Female, age 91, right hemisphere 38.2
Hippocampus, CA1
nTPM: 85.2
2749 Male, age 80, left hemisphere 214.6
2527 Male, age 74, both hemispheres 85.6
1873 Female, age 85, both hemispheres 52.8
2082 Female, age 91, right hemisphere 38.4
2045 Male, age 76, both hemispheres 34.4
Hippocampus, CA2
nTPM: 69.5
1963 Male, age 80, left hemisphere 120.2
2437 Female, age 94, left hemisphere 76.4
2249 Male, age 74, both hemispheres 70.2
1892 Male, age 76, both hemispheres 66.1
2113 Female, age 91, right hemisphere 52.4
1940 Female, age 85, left hemisphere 31.9
Hippocampus, CA3
nTPM: 69.3
2137 Male, age 80, left hemisphere 144.8
2861 Female, age 67, both hemispheres 103.2
1867 Male, age 76, both hemispheres 63.9
2436 Male, age 74, both hemispheres 39.7
1891 Female, age 85, both hemispheres 34.0
2620 Female, age 94, left hemisphere 29.9
Parahippocampal cortex
nTPM: 54.4
2245 Female, age 91, both hemispheres 95.1
2250 Female, age 67, right hemisphere 68.4
2622 Female, age 67, right hemisphere 59.1
2018 Male, age 76, both hemispheres 56.3
1933 Female, age 85, both hemispheres 50.0
1990 Female, age 91, right hemisphere 48.9
2692 Male, age 74, both hemispheres 48.3
2532 Female, age 72, left hemisphere 44.6
1850 Male, age 80, both hemispheres 42.0
2693 Female, age 94, both hemispheres 31.4
Perirhinal gyrus
nTPM: 49.3
2521 Female, age 94, right hemisphere 62.1
1847 Female, age 91, left hemisphere 58.2
1794 Male, age 80, right hemisphere 55.6
1841 Female, age 85, right hemisphere 39.9
2848 Male, age 76, right hemisphere 30.6
Subiculum
nTPM: 54.2
1901 Male, age 80, both hemispheres 77.2
2438 Female, age 94, left hemisphere 57.9
2042 Male, age 76, both hemispheres 54.7
2619 Male, age 74, both hemispheres 52.8
1977 Female, age 85, both hemispheres 51.0
2729 Female, age 91, right hemisphere 31.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 227.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 227.5
Samples: 197

Max nTPM: 744.0
Min nTPM: 13.3
Std nTPM: 121.4
Median nTPM: 196.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 744.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 594.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 553.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 544.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 540.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 520.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 500.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 483.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 483.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 483.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 475.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 226.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 226.0
FF:10169-103B7 60 years, female 282.5
FF:10153-102I9 76 years, female 169.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 98.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 98.9
Samples: 4

Max nTPM: 119.0
Min nTPM: 83.1
Sample A Female 119.0
Sample B Female 95.5
Sample C Male 97.8
Sample D Male 83.1
Entorhinal cortex
nTPM: 87.4
Samples: 4

Max nTPM: 98.1
Min nTPM: 77.5
Sample A Female 77.9
Sample B Female 96.2
Sample C Male 98.1
Sample D Male 77.5
Subiculum
nTPM: 70.9
Samples: 4

Max nTPM: 98.7
Min nTPM: 59.6
Sample A Female 98.7
Sample B Female 63.6
Sample C Male 61.7
Sample D Male 59.6
Ventral hippocampus
nTPM: 86.3
Samples: 4

Max nTPM: 116.2
Min nTPM: 61.8
Sample A Female 76.2
Sample B Female 61.8
Sample C Male 91.0
Sample D Male 116.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 7.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 7.0
Samples: 4

Max nTPM: 7.9
Min nTPM: 6.2
Sample A Male 7.9
Sample B Male 7.4
Sample C Female 6.5
Sample D Female 6.2
Hippocampal formation
nTPM: 7.8
Samples: 4

Max nTPM: 8.3
Min nTPM: 7.4
Sample A Male 7.7
Sample B Male 8.3
Sample C Female 7.7
Sample D Female 7.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.2
71574362 Antisense, RP_050915_03_F02, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

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