ABOUTMENU
HELP
NEWS
MTLN
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.2 nTPM
HPA:71.2 nTPM
GTEx:77.6 nTPM
FANTOM5:66.8 Scaled Tags Per Million
Mouse:42.1 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 71.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 68.0
1857 Female, age 85, left hemisphere 70.7
1781 Male, age 74, unknown 69.4
2288 Male, age 75, left hemisphere 68.3
2481 Female, age 94, left hemisphere 68.1
2290 Female, age 72, unknown 68.0
2846 Female, age 79, unknown 67.6
2289 Male, age 61, right hemisphere 65.9
1854 Male, age 80, left hemisphere 65.6
Claustrum
nTPM: 66.3
2198 Male, age 80, both hemispheres 72.2
2284 Female, age 91, both hemispheres 68.9
2491 Male, age 75, both hemispheres 68.8
2568 Male, age 61, both hemispheres 68.2
1956 Male, age 74, unknown 65.8
2196 Female, age 79, unknown 65.1
2645 Female, age 72, unknown 63.2
2392 Female, age 94, both hemispheres 62.4
2292 Female, age 85, both hemispheres 62.3
Globus pallidus, externus
nTPM: 70.9
2772 Female, age 79, unknown 80.4
1996 Male, age 80, right hemisphere 74.0
2395 Male, age 75, both hemispheres 67.8
2567 Female, age 72, unknown 66.9
2646 Male, age 61, right hemisphere 65.3
Globus pallidus, internus
nTPM: 71.2
2287 Male, age 75, right hemisphere 80.6
1818 Male, age 74, unknown 73.6
2037 Male, age 80, right hemisphere 72.8
2483 Female, age 94, right hemisphere 72.7
2566 Female, age 72, unknown 70.5
2778 Female, age 91, both hemispheres 68.4
2111 Female, age 85, right hemisphere 60.0
Nucleus accumbens
nTPM: 66.9
1856 Female, age 91, right hemisphere 73.3
1806 Female, age 85, left hemisphere 70.7
1783 Male, age 74, unknown 68.2
2286 Male, age 75, left hemisphere 67.7
2391 Female, age 94, left hemisphere 65.0
2698 Female, age 72, unknown 64.7
2824 Male, age 61, right hemisphere 64.0
2732 Male, age 80, right hemisphere 61.6
Nucleus basalis of Meynert
nTPM: 66.8
2484 Female, age 94, left hemisphere 68.1
2821 Male, age 75, both hemispheres 67.6
2569 Male, age 61, both hemispheres 66.4
2393 Male, age 80, right hemisphere 65.0
Nucleus of the diagonal band
nTPM: 67.4
1812 Female, age 91, both hemispheres 69.9
2775 Male, age 80, right hemisphere 69.1
2195 Female, age 85, both hemispheres 68.2
2029 Male, age 61, right hemisphere 66.7
1979 Male, age 74, unknown 63.1
Olfactory tubercle
nTPM: 68.7
1998 Female, age 91, both hemispheres 74.6
1846 Male, age 80, right hemisphere 71.2
2856 Male, age 75, right hemisphere 65.5
2487 Female, age 94, left hemisphere 63.6
Putamen
nTPM: 65.9
1838 Male, age 80, right hemisphere 70.7
1937 Female, age 91, right hemisphere 70.4
2482 Female, age 94, left hemisphere 66.7
2647 Male, age 75, left hemisphere 66.4
2466 Female, age 79, unknown 64.7
2489 Female, age 72, unknown 63.0
1829 Male, age 74, unknown 59.1
Septal nuclei
nTPM: 65.3
1960 Male, age 74, unknown 71.4
2031 Female, age 72, unknown 70.3
2009 Female, age 91, both hemispheres 67.6
2059 Female, age 85, both hemispheres 64.4
2629 Female, age 94, right hemisphere 63.5
2199 Male, age 80, right hemisphere 62.2
2394 Male, age 61, left hemisphere 58.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 77.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 71.0
Samples: 246

Max nTPM: 181.3
Min nTPM: 22.1
Std nTPM: 25.2
Median nTPM: 67.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 181.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 164.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 157.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 157.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 149.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 145.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 137.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 135.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 128.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 127.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 125.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 72.0
Samples: 246

Max nTPM: 196.1
Min nTPM: 23.5
Std nTPM: 25.4
Median nTPM: 66.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 196.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 157.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 151.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 150.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 146.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 145.9
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 144.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 140.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 132.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 128.4
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 127.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 77.6
Samples: 205

Max nTPM: 185.3
Min nTPM: 29.9
Std nTPM: 23.1
Median nTPM: 75.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 185.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 140.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 140.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 137.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 135.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 128.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 128.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 123.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 120.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 116.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 116.3
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.7
FF:10164-103B2 76 years, female 52.7
Globus pallidus
Scaled Tags Per Million: 53.6
FF:10175-103C4 60 years, female 60.7
FF:10161-103A8 76 years, female 46.6
Nucleus accumbens
Scaled Tags Per Million: 37.2
FF:10037-101F1 23-56 years, mixed 37.2
Putamen
Scaled Tags Per Million: 66.8
FF:10176-103C5 60 years, female 66.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.9
Samples: 4

Max nTPM: 42.1
Min nTPM: 32.2
Sample A Male 36.3
Sample B Male 42.1
Sample C Female 32.2
Sample D Female 32.9
Septum
nTPM: 42.1
Samples: 4

Max nTPM: 47.4
Min nTPM: 34.9
Sample A Male 34.9
Sample B Male 47.4
Sample C Female 45.2
Sample D Female 41.0
Ventral forebrain
nTPM: 41.1
Samples: 4

Max nTPM: 52.5
Min nTPM: 35.2
Sample A Male 40.9
Sample B Male 35.2
Sample C Female 52.5
Sample D Female 35.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
70598394 Antisense, RP_050412_01_H12, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
70598394 Antisense, RP_050412_01_H12, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.