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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.8 nTPM
HPA:68.8 nTPM
GTEx:71.1 nTPM
FANTOM5:55.2 Scaled Tags Per Million
Mouse:46.0 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 68.8
Sample id Sample description nTPM
Hippocampus
nTPM: 66.0
1898 Male, age 80, left hemisphere 75.2
2529 Female, age 94, left hemisphere 68.2
2621 Female, age 67, right hemisphere 67.6
1855 Male, age 76, left hemisphere 63.9
2148 Female, age 91, left hemisphere 61.5
1911 Female, age 85, right hemisphere 59.4
Dentate gyrus
nTPM: 65.9
2530 Female, age 94, left hemisphere 71.3
2010 Male, age 76, both hemispheres 68.0
1927 Female, age 91, both hemispheres 67.4
2246 Female, age 85, both hemispheres 64.7
2528 Male, age 74, both hemispheres 62.6
2531 Female, age 67, both hemispheres 61.4
Entorhinal gyrus
nTPM: 65.8
2764 Male, age 80, right hemisphere 70.8
1938 Female, age 85, left hemisphere 68.5
1787 Male, age 76, left hemisphere 65.8
2613 Female, age 94, left hemisphere 64.7
2117 Female, age 91, right hemisphere 63.3
2686 Male, age 75, right hemisphere 61.5
Hippocampus, CA1
nTPM: 68.8
2749 Male, age 80, left hemisphere 82.2
2045 Male, age 76, both hemispheres 67.0
2527 Male, age 74, both hemispheres 67.0
1873 Female, age 85, both hemispheres 64.4
2082 Female, age 91, right hemisphere 63.6
Hippocampus, CA2
nTPM: 66.8
1892 Male, age 76, both hemispheres 71.8
1963 Male, age 80, left hemisphere 70.9
2437 Female, age 94, left hemisphere 67.2
2249 Male, age 74, both hemispheres 64.9
1940 Female, age 85, left hemisphere 64.6
2113 Female, age 91, right hemisphere 61.4
Hippocampus, CA3
nTPM: 67.9
2137 Male, age 80, left hemisphere 72.5
2620 Female, age 94, left hemisphere 70.6
1867 Male, age 76, both hemispheres 69.3
2436 Male, age 74, both hemispheres 67.8
2861 Female, age 67, both hemispheres 64.7
1891 Female, age 85, both hemispheres 62.8
Parahippocampal cortex
nTPM: 65.9
2250 Female, age 67, right hemisphere 71.0
2245 Female, age 91, both hemispheres 70.8
1990 Female, age 91, right hemisphere 67.4
1850 Male, age 80, both hemispheres 66.5
2692 Male, age 74, both hemispheres 66.1
2622 Female, age 67, right hemisphere 65.2
1933 Female, age 85, both hemispheres 64.8
2018 Male, age 76, both hemispheres 64.2
2532 Female, age 72, left hemisphere 61.8
2693 Female, age 94, both hemispheres 61.2
Perirhinal gyrus
nTPM: 68.0
1794 Male, age 80, right hemisphere 72.3
1847 Female, age 91, left hemisphere 71.6
1841 Female, age 85, right hemisphere 67.2
2521 Female, age 94, right hemisphere 66.4
2848 Male, age 76, right hemisphere 62.4
Subiculum
nTPM: 65.5
2619 Male, age 74, both hemispheres 69.3
1901 Male, age 80, both hemispheres 68.7
1977 Female, age 85, both hemispheres 67.9
2042 Male, age 76, both hemispheres 63.5
2438 Female, age 94, left hemisphere 62.2
2729 Female, age 91, right hemisphere 61.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 71.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 71.1
Samples: 197

Max nTPM: 248.2
Min nTPM: 8.4
Std nTPM: 29.9
Median nTPM: 65.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 248.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 168.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 157.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 143.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 143.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 140.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 138.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 135.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 133.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 133.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 131.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 55.2
FF:10169-103B7 60 years, female 69.0
FF:10153-102I9 76 years, female 41.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 46.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 37.0
Samples: 4

Max nTPM: 40.6
Min nTPM: 32.4
Sample A Male 36.8
Sample B Male 40.6
Sample C Female 38.0
Sample D Female 32.4
Hippocampal formation
nTPM: 46.0
Samples: 4

Max nTPM: 47.6
Min nTPM: 43.6
Sample A Male 43.6
Sample B Male 47.6
Sample C Female 45.8
Sample D Female 47.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
70598394 Antisense, RP_050412_01_H12, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.