ABOUTMENU
HELP
NEWS
SMIM19
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:35.4 nTPM
HPA:35.4 nTPM
GTEx:36.7 nTPM
FANTOM5:36.2 Scaled Tags Per Million
Pig:14.8 nTPM
Mouse:41.3 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA011145
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.8
1857 Female, age 85, left hemisphere 36.6
2481 Female, age 94, left hemisphere 36.0
2288 Male, age 75, left hemisphere 35.2
2290 Female, age 72, unknown 34.5
2846 Female, age 79, unknown 34.5
1854 Male, age 80, left hemisphere 34.1
1781 Male, age 74, unknown 33.9
2289 Male, age 61, right hemisphere 33.9
Claustrum
nTPM: 33.6
2196 Female, age 79, unknown 35.0
1956 Male, age 74, unknown 34.8
2198 Male, age 80, both hemispheres 34.8
2392 Female, age 94, both hemispheres 34.4
2491 Male, age 75, both hemispheres 33.6
2568 Male, age 61, both hemispheres 33.2
2284 Female, age 91, both hemispheres 32.7
2292 Female, age 85, both hemispheres 32.4
2645 Female, age 72, unknown 31.8
Globus pallidus, externus
nTPM: 34.2
2772 Female, age 79, unknown 36.1
1996 Male, age 80, right hemisphere 35.7
2646 Male, age 61, right hemisphere 34.7
2395 Male, age 75, both hemispheres 33.8
2567 Female, age 72, unknown 30.8
Globus pallidus, internus
nTPM: 34.5
2287 Male, age 75, right hemisphere 37.3
2483 Female, age 94, right hemisphere 36.1
1818 Male, age 74, unknown 34.9
2778 Female, age 91, both hemispheres 34.4
2111 Female, age 85, right hemisphere 33.4
2037 Male, age 80, right hemisphere 33.2
2566 Female, age 72, unknown 32.0
Nucleus accumbens
nTPM: 35.1
1856 Female, age 91, right hemisphere 36.0
1806 Female, age 85, left hemisphere 35.9
2286 Male, age 75, left hemisphere 35.9
2824 Male, age 61, right hemisphere 35.6
2732 Male, age 80, right hemisphere 34.7
1783 Male, age 74, unknown 34.4
2698 Female, age 72, unknown 34.3
2391 Female, age 94, left hemisphere 34.2
Nucleus basalis of Meynert
nTPM: 33.2
2484 Female, age 94, left hemisphere 34.3
2821 Male, age 75, both hemispheres 33.3
2393 Male, age 80, right hemisphere 33.0
2569 Male, age 61, both hemispheres 32.1
Nucleus of the diagonal band
nTPM: 35.4
1812 Female, age 91, both hemispheres 37.2
2775 Male, age 80, right hemisphere 36.2
2029 Male, age 61, right hemisphere 34.6
1979 Male, age 74, unknown 34.4
2195 Female, age 85, both hemispheres 34.4
Olfactory tubercle
nTPM: 34.3
1846 Male, age 80, right hemisphere 35.3
2487 Female, age 94, left hemisphere 35.1
2856 Male, age 75, right hemisphere 33.6
1998 Female, age 91, both hemispheres 33.3
Putamen
nTPM: 33.6
2466 Female, age 79, unknown 34.8
2482 Female, age 94, left hemisphere 34.8
1937 Female, age 91, right hemisphere 34.5
1829 Male, age 74, unknown 34.2
1838 Male, age 80, right hemisphere 34.0
2489 Female, age 72, unknown 31.9
2647 Male, age 75, left hemisphere 31.2
Septal nuclei
nTPM: 34.3
2031 Female, age 72, unknown 36.6
2629 Female, age 94, right hemisphere 34.8
1960 Male, age 74, unknown 34.7
2059 Female, age 85, both hemispheres 34.3
2009 Female, age 91, both hemispheres 34.1
2199 Male, age 80, right hemisphere 33.4
2394 Male, age 61, left hemisphere 32.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.3
Samples: 246

Max nTPM: 78.4
Min nTPM: 18.0
Std nTPM: 8.4
Median nTPM: 32.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 78.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 74.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 68.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 60.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 57.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 57.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 56.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 51.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 50.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 49.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 49.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.7
Samples: 246

Max nTPM: 86.2
Min nTPM: 15.6
Std nTPM: 8.9
Median nTPM: 35.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 86.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 79.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 75.1
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 68.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 65.9
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 55.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 54.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 54.5
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 53.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 53.2
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 51.7
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 33.4
Samples: 205

Max nTPM: 78.9
Min nTPM: 17.9
Std nTPM: 7.8
Median nTPM: 32.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 78.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 52.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 51.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 51.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 50.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 49.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 49.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 49.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 48.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 48.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 48.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.4
FF:10164-103B2 76 years, female 29.4
Globus pallidus
Scaled Tags Per Million: 34.5
FF:10175-103C4 60 years, female 42.6
FF:10161-103A8 76 years, female 26.3
Nucleus accumbens
Scaled Tags Per Million: 36.2
FF:10037-101F1 23-56 years, mixed 36.2
Putamen
Scaled Tags Per Million: 32.7
FF:10176-103C5 60 years, female 32.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.8
Pig sample Sample description nTPM
Caudate
nTPM: 13.9
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.6
Sample A Female 15.5
Sample B Female 12.6
Sample C Male 14.2
Sample D Male 13.4
Putamen
nTPM: 14.8
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.4
Sample A Female 15.6
Sample B Female 13.8
Sample C Male 17.3
Sample D Male 12.4
Septum
nTPM: 13.5
Samples: 4

Max nTPM: 16.3
Min nTPM: 12.3
Sample A Female 16.3
Sample B Female 12.3
Sample C Male 12.6
Sample D Male 12.8
Ventral pallidum
nTPM: 12.6
Samples: 4

Max nTPM: 15.6
Min nTPM: 10.4
Sample A Female 15.6
Sample B Female 13.1
Sample C Male 10.4
Sample D Male 11.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 41.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 31.1
Samples: 4

Max nTPM: 33.5
Min nTPM: 27.9
Sample A Male 33.5
Sample B Male 32.5
Sample C Female 27.9
Sample D Female 30.3
Septum
nTPM: 41.3
Samples: 4

Max nTPM: 42.6
Min nTPM: 39.6
Sample A Male 42.6
Sample B Male 41.1
Sample C Female 39.6
Sample D Female 41.9
Ventral forebrain
nTPM: 31.7
Samples: 4

Max nTPM: 35.2
Min nTPM: 28.2
Sample A Male 28.7
Sample B Male 35.2
Sample C Female 34.8
Sample D Female 28.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71213081 Antisense, RP_050816_03_G11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71213081 Antisense, RP_050816_03_G11, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.