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ACBD7
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA:37.1 nTPM
GTEx:25.3 nTPM
FANTOM5:38.3 Scaled Tags Per Million
Pig:12.8 nTPM
Mouse:3.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.8
2586 Male, age 75, left hemisphere 42.1
2828 Female, age 72, unknown 33.0
1833 Male, age 53, unknown 31.6
2219 Male, age 76, both hemispheres 31.6
1827 Male, age 72, unknown 28.3
1830 Male, age 51, unknown 27.9
2411 Female, age 72, unknown 27.1
2666 Male, age 74, left hemisphere 26.6
1870 Female, age 42, unknown 26.4
2019 Male, age 18, unknown 23.7
Dorsal raphe nucleus
nTPM: 31.0
2016 Female, age 72, unknown 38.5
1828 Male, age 53, unknown 33.0
2047 Male, age 72, unknown 31.7
2298 Female, age 72, unknown 26.1
2750 Male, age 76, both hemispheres 25.8
Inferior colliculus
nTPM: 37.1
1848 Female, age 42, unknown 39.8
1890 Male, age 53, unknown 37.1
2849 Male, age 72, unknown 36.4
2097 Female, age 72, unknown 35.0
Median raphe nucleus
nTPM: 25.0
2220 Male, age 76, midline 25.0
Pedunculopontine tegmental nucleus
nTPM: 24.8
1921 Female, age 85, both hemispheres 29.4
2334 Male, age 80, both hemispheres 25.4
2338 Male, age 61, both hemispheres 19.7
Periaquaductal grey, anterior
nTPM: 28.4
2502 Female, age 75, unknown 30.7
1947 Male, age 18, unknown 29.2
1795 Male, age 51, unknown 25.4
Periaquaductal grey, dorsal
nTPM: 34.6
1840 Male, age 53, unknown 39.0
2850 Male, age 76, both hemispheres 35.7
2464 Female, age 72, unknown 34.7
1831 Male, age 72, unknown 29.0
Periaquaductal grey, lateral
nTPM: 29.0
2140 Male, age 76, both hemispheres 32.9
2053 Male, age 18, unknown 31.4
2272 Male, age 74, both hemispheres 22.6
Pretectal area
nTPM: 28.2
2825 Male, age 18, unknown 31.9
1817 Female, age 42, unknown 31.5
1815 Male, age 53, unknown 30.4
1816 Male, age 51, unknown 28.7
2316 Male, age 76, right hemisphere 28.7
2667 Female, age 75, unknown 28.6
1944 Female, age 72, unknown 28.0
2224 Female, age 72, unknown 27.3
2407 Male, age 75, both hemispheres 27.1
2273 Male, age 74, both hemispheres 25.6
2007 Male, age 72, unknown 22.3
Red nucleus
nTPM: 32.0
1954 Female, age 42, unknown 39.2
2503 Female, age 72, unknown 37.7
2588 Male, age 74, left hemisphere 37.2
1821 Female, age 72, unknown 36.6
2227 Male, age 72, unknown 35.2
2769 Male, age 72, unknown 34.9
1904 Male, age 53, unknown 31.2
2823 Male, age 76, right hemisphere 30.9
1865 Male, age 51, unknown 30.6
2725 Female, age 75, unknown 25.8
2584 Male, age 75, left hemisphere 23.2
2785 Male, age 18, unknown 21.5
Substantia nigra
nTPM: 34.4
2699 Male, age 18, unknown 48.5
2241 Male, age 72, unknown 39.1
2665 Male, age 74, both hemispheres 38.1
1916 Female, age 42, unknown 37.4
1851 Male, age 51, unknown 36.6
2590 Female, age 75, unknown 32.4
1889 Female, age 72, unknown 30.3
2409 Female, age 72, unknown 28.4
2583 Male, age 75, right hemisphere 27.4
1941 Male, age 53, unknown 25.7
Superior colliculus
nTPM: 30.8
2664 Male, age 75, both hemispheres 41.9
2668 Female, age 75, unknown 35.0
1995 Male, age 72, unknown 32.5
1839 Male, age 51, unknown 31.3
2261 Male, age 18, unknown 30.1
2087 Female, age 72, unknown 30.0
1895 Male, age 76, right hemisphere 29.4
1796 Male, age 53, unknown 27.0
2587 Male, age 74, left hemisphere 26.5
1913 Female, age 42, unknown 24.2
Ventral tegmental area
nTPM: 28.5
1942 Male, age 51, unknown 30.3
1915 Female, age 42, unknown 29.9
2410 Female, age 72, unknown 29.9
2021 Male, age 53, unknown 29.7
2218 Male, age 76, both hemispheres 26.8
2223 Female, age 72, unknown 24.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.3
Samples: 139

Max nTPM: 93.5
Min nTPM: 1.8
Std nTPM: 17.6
Median nTPM: 21.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 93.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 85.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 83.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 75.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 70.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 65.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 61.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 57.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 55.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 55.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 53.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.3
FF:10158-103A5 76 years, female 38.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.8
Pig sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 11.0
Min nTPM: 2.4
Sample A Female 4.2
Sample B Female 2.4
Sample C Male 6.9
Sample D Male 11.0
Periaqueductal gray
nTPM: 3.3
Samples: 3

Max nTPM: 4.6
Min nTPM: 2.3
Sample B Female 3.1
Sample C Male 2.3
Sample D Male 4.6
Substantia nigra
nTPM: 7.0
Samples: 4

Max nTPM: 15.5
Min nTPM: 1.7
Sample A Female 15.5
Sample B Female 1.7
Sample C Male 2.2
Sample D Male 8.5
Superior colliculi
nTPM: 12.8
Samples: 4

Max nTPM: 26.7
Min nTPM: 5.1
Sample A Female 26.7
Sample B Female 5.1
Sample C Male 9.8
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.1
Sample A Male 4.4
Sample B Male 2.1
Sample C Female 3.0
Sample D Female 4.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71892430 Antisense, RP_051012_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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