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ACBD7
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.0 nTPM
HPA:36.0 nTPM
GTEx:40.5 nTPM
FANTOM5:161.1 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:3.4 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.0
1857 Female, age 85, left hemisphere 42.1
2290 Female, age 72, unknown 40.2
2481 Female, age 94, left hemisphere 39.9
1854 Male, age 80, left hemisphere 36.2
2289 Male, age 61, right hemisphere 35.6
2288 Male, age 75, left hemisphere 33.1
2846 Female, age 79, unknown 28.0
1781 Male, age 74, unknown 24.6
Claustrum
nTPM: 20.2
2568 Male, age 61, both hemispheres 24.5
2645 Female, age 72, unknown 22.2
2491 Male, age 75, both hemispheres 21.8
2196 Female, age 79, unknown 21.4
2392 Female, age 94, both hemispheres 20.0
2284 Female, age 91, both hemispheres 19.6
2198 Male, age 80, both hemispheres 18.8
1956 Male, age 74, unknown 18.3
2292 Female, age 85, both hemispheres 15.5
Globus pallidus, externus
nTPM: 36.0
2646 Male, age 61, right hemisphere 45.7
1996 Male, age 80, right hemisphere 43.1
2567 Female, age 72, unknown 36.1
2772 Female, age 79, unknown 30.1
2395 Male, age 75, both hemispheres 25.1
Globus pallidus, internus
nTPM: 32.5
2037 Male, age 80, right hemisphere 40.5
1818 Male, age 74, unknown 39.9
2483 Female, age 94, right hemisphere 35.4
2111 Female, age 85, right hemisphere 29.9
2287 Male, age 75, right hemisphere 28.4
2778 Female, age 91, both hemispheres 27.1
2566 Female, age 72, unknown 26.1
Nucleus accumbens
nTPM: 31.8
2824 Male, age 61, right hemisphere 38.2
1806 Female, age 85, left hemisphere 38.1
2286 Male, age 75, left hemisphere 36.6
2698 Female, age 72, unknown 30.7
1783 Male, age 74, unknown 29.9
1856 Female, age 91, right hemisphere 28.6
2391 Female, age 94, left hemisphere 26.4
2732 Male, age 80, right hemisphere 25.9
Nucleus basalis of Meynert
nTPM: 33.4
2569 Male, age 61, both hemispheres 54.6
2393 Male, age 80, right hemisphere 29.0
2484 Female, age 94, left hemisphere 27.9
2821 Male, age 75, both hemispheres 22.0
Nucleus of the diagonal band
nTPM: 26.7
1979 Male, age 74, unknown 31.0
2029 Male, age 61, right hemisphere 27.1
2195 Female, age 85, both hemispheres 26.6
2775 Male, age 80, right hemisphere 26.3
1812 Female, age 91, both hemispheres 22.6
Olfactory tubercle
nTPM: 27.5
2856 Male, age 75, right hemisphere 35.1
1846 Male, age 80, right hemisphere 30.0
1998 Female, age 91, both hemispheres 23.6
2487 Female, age 94, left hemisphere 21.2
Putamen
nTPM: 29.2
2647 Male, age 75, left hemisphere 32.7
2482 Female, age 94, left hemisphere 32.6
2489 Female, age 72, unknown 30.0
1838 Male, age 80, right hemisphere 29.4
1937 Female, age 91, right hemisphere 27.3
1829 Male, age 74, unknown 27.0
2466 Female, age 79, unknown 25.4
Septal nuclei
nTPM: 26.6
2059 Female, age 85, both hemispheres 31.5
2199 Male, age 80, right hemisphere 29.8
2394 Male, age 61, left hemisphere 29.0
1960 Male, age 74, unknown 25.3
2009 Female, age 91, both hemispheres 23.6
2031 Female, age 72, unknown 23.6
2629 Female, age 94, right hemisphere 23.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.5
Samples: 246

Max nTPM: 111.5
Min nTPM: 1.9
Std nTPM: 17.8
Median nTPM: 40.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 111.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 98.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 97.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 83.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 82.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 80.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 78.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 77.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 75.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 75.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 73.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.3
Samples: 246

Max nTPM: 84.6
Min nTPM: 2.6
Std nTPM: 16.6
Median nTPM: 32.4
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 84.6
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 81.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 78.9
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 77.1
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 76.6
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 76.5
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 76.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 68.5
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 68.1
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 67.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 65.4
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Brain - Putamen (basal ganglia)
Average nTPM: 33.6
Samples: 205

Max nTPM: 84.8
Min nTPM: 3.4
Std nTPM: 16.0
Median nTPM: 32.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 84.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 73.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 71.8
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 68.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 68.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 66.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 65.6
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 64.8
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 63.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 63.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 61.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 161.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 127.7
FF:10164-103B2 76 years, female 127.7
Globus pallidus
Scaled Tags Per Million: 86.8
FF:10175-103C4 60 years, female 98.6
FF:10161-103A8 76 years, female 74.9
Nucleus accumbens
Scaled Tags Per Million: 129.0
FF:10037-101F1 23-56 years, mixed 129.0
Putamen
Scaled Tags Per Million: 161.1
FF:10176-103C5 60 years, female 161.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Caudate
nTPM: 2.4
Samples: 4

Max nTPM: 3.8
Min nTPM: 1.5
Sample A Female 3.8
Sample B Female 1.5
Sample C Male 2.6
Sample D Male 1.7
Putamen
nTPM: 7.3
Samples: 4

Max nTPM: 18.9
Min nTPM: 2.3
Sample A Female 18.9
Sample B Female 2.3
Sample C Male 5.6
Sample D Male 2.3
Septum
nTPM: 2.3
Samples: 4

Max nTPM: 4.7
Min nTPM: 1.3
Sample A Female 4.7
Sample B Female 1.3
Sample C Male 1.5
Sample D Male 1.8
Ventral pallidum
nTPM: 2.1
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.3
Sample A Female 2.8
Sample B Female 1.5
Sample C Male 2.7
Sample D Male 1.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.3
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.0
Sample A Male 1.5
Sample B Male 1.8
Sample C Female 1.7
Sample D Female 0.0
Septum
nTPM: 3.4
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.7
Sample A Male 3.5
Sample B Male 3.4
Sample C Female 2.7
Sample D Female 3.9
Ventral forebrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.0
Sample A Male 2.1
Sample B Male 1.0
Sample C Female 1.0
Sample D Female 2.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71892430 Antisense, RP_051012_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71892430 Antisense, RP_051012_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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