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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.6 nTPM
HPA:55.6 nTPM
GTEx:62.1 nTPM
FANTOM5:78.6 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:140.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.3
2019 Male, age 18, unknown 56.7
2411 Female, age 72, unknown 56.2
1870 Female, age 42, unknown 55.7
1833 Male, age 53, unknown 55.4
1830 Male, age 51, unknown 55.0
1827 Male, age 72, unknown 54.3
2586 Male, age 75, left hemisphere 53.6
2219 Male, age 76, both hemispheres 52.7
2828 Female, age 72, unknown 52.5
2666 Male, age 74, left hemisphere 51.3
Dorsal raphe nucleus
nTPM: 54.5
2750 Male, age 76, both hemispheres 55.5
2298 Female, age 72, unknown 55.0
2016 Female, age 72, unknown 54.5
1828 Male, age 53, unknown 54.4
2047 Male, age 72, unknown 53.2
Inferior colliculus
nTPM: 55.1
2097 Female, age 72, unknown 58.3
1848 Female, age 42, unknown 55.0
2849 Male, age 72, unknown 53.7
1890 Male, age 53, unknown 53.5
Median raphe nucleus
nTPM: 55.6
2220 Male, age 76, midline 55.6
Pedunculopontine tegmental nucleus
nTPM: 55.6
2334 Male, age 80, both hemispheres 56.0
2338 Male, age 61, both hemispheres 55.5
1921 Female, age 85, both hemispheres 55.2
Periaquaductal grey, anterior
nTPM: 55.6
2502 Female, age 75, unknown 56.2
1947 Male, age 18, unknown 55.7
1795 Male, age 51, unknown 54.8
Periaquaductal grey, dorsal
nTPM: 54.6
2850 Male, age 76, both hemispheres 55.6
1840 Male, age 53, unknown 55.2
2464 Female, age 72, unknown 54.4
1831 Male, age 72, unknown 53.0
Periaquaductal grey, lateral
nTPM: 54.8
2272 Male, age 74, both hemispheres 57.6
2053 Male, age 18, unknown 53.9
2140 Male, age 76, both hemispheres 53.0
Pretectal area
nTPM: 54.4
2273 Male, age 74, both hemispheres 56.9
2224 Female, age 72, unknown 55.9
1817 Female, age 42, unknown 55.6
1944 Female, age 72, unknown 55.6
2007 Male, age 72, unknown 54.8
1815 Male, age 53, unknown 54.4
1816 Male, age 51, unknown 54.3
2667 Female, age 75, unknown 53.5
2825 Male, age 18, unknown 53.1
2407 Male, age 75, both hemispheres 52.1
2316 Male, age 76, right hemisphere 52.0
Red nucleus
nTPM: 55.2
1821 Female, age 72, unknown 58.3
1954 Female, age 42, unknown 56.9
2725 Female, age 75, unknown 55.9
1865 Male, age 51, unknown 55.5
2769 Male, age 72, unknown 55.4
1904 Male, age 53, unknown 55.3
2503 Female, age 72, unknown 55.0
2823 Male, age 76, right hemisphere 54.7
2227 Male, age 72, unknown 54.6
2785 Male, age 18, unknown 54.5
2584 Male, age 75, left hemisphere 53.7
2588 Male, age 74, left hemisphere 52.8
Substantia nigra
nTPM: 54.9
2241 Male, age 72, unknown 59.6
2409 Female, age 72, unknown 55.9
1889 Female, age 72, unknown 55.8
1851 Male, age 51, unknown 55.2
1941 Male, age 53, unknown 54.9
1916 Female, age 42, unknown 54.8
2699 Male, age 18, unknown 54.1
2590 Female, age 75, unknown 53.3
2665 Male, age 74, both hemispheres 53.1
2583 Male, age 75, right hemisphere 52.6
Superior colliculus
nTPM: 54.6
2587 Male, age 74, left hemisphere 56.1
2668 Female, age 75, unknown 55.7
2261 Male, age 18, unknown 55.5
1796 Male, age 53, unknown 54.7
2087 Female, age 72, unknown 54.7
1895 Male, age 76, right hemisphere 54.6
1913 Female, age 42, unknown 54.5
1995 Male, age 72, unknown 54.5
1839 Male, age 51, unknown 54.1
2664 Male, age 75, both hemispheres 51.6
Ventral tegmental area
nTPM: 54.7
1915 Female, age 42, unknown 55.6
2410 Female, age 72, unknown 55.1
2223 Female, age 72, unknown 54.6
2218 Male, age 76, both hemispheres 54.5
1942 Male, age 51, unknown 54.2
2021 Male, age 53, unknown 53.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.1
Samples: 139

Max nTPM: 163.1
Min nTPM: 33.9
Std nTPM: 18.3
Median nTPM: 58.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 163.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 124.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 114.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 113.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 110.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 103.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 100.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 96.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 88.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 86.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 85.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.6
FF:10158-103A5 76 years, female 78.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.2
Pig sample Sample description nTPM
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 20.2
Min nTPM: 17.3
Sample A Female 20.2
Sample B Female 17.6
Sample C Male 17.3
Sample D Male 17.7
Periaqueductal gray
nTPM: 14.1
Samples: 3

Max nTPM: 15.7
Min nTPM: 11.9
Sample B Female 11.9
Sample C Male 14.8
Sample D Male 15.7
Substantia nigra
nTPM: 16.5
Samples: 4

Max nTPM: 23.4
Min nTPM: 12.2
Sample A Female 23.4
Sample B Female 14.0
Sample C Male 16.3
Sample D Male 12.2
Superior colliculi
nTPM: 17.3
Samples: 4

Max nTPM: 22.2
Min nTPM: 10.8
Sample A Female 22.2
Sample B Female 10.8
Sample C Male 18.7
Sample D Male 17.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 140.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 140.8
Samples: 4

Max nTPM: 154.8
Min nTPM: 132.8
Sample A Male 154.8
Sample B Male 138.8
Sample C Female 132.8
Sample D Female 136.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70609184 Antisense, RP_050412_02_H06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.