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LY6H
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:97.9 nTPM
HPA:97.9 nTPM
GTEx:426.1 nTPM
FANTOM5:161.4 Scaled Tags Per Million
Pig:59.3 nTPM
Mouse:200.1 nTPM
Allen mouse:13.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA077218
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 97.9
Sample id Sample description nTPM
Hippocampus
nTPM: 62.8
1898 Male, age 80, left hemisphere 84.4
1855 Male, age 76, left hemisphere 71.1
2621 Female, age 67, right hemisphere 65.5
2148 Female, age 91, left hemisphere 55.9
2529 Female, age 94, left hemisphere 51.2
1911 Female, age 85, right hemisphere 48.6
Dentate gyrus
nTPM: 70.9
1927 Female, age 91, both hemispheres 95.5
2010 Male, age 76, both hemispheres 81.2
2530 Female, age 94, left hemisphere 71.1
2246 Female, age 85, both hemispheres 67.3
2531 Female, age 67, both hemispheres 57.5
2528 Male, age 74, both hemispheres 52.7
Entorhinal gyrus
nTPM: 73.4
1938 Female, age 85, left hemisphere 93.0
2764 Male, age 80, right hemisphere 84.7
2613 Female, age 94, left hemisphere 83.2
1787 Male, age 76, left hemisphere 74.5
2686 Male, age 75, right hemisphere 54.1
2117 Female, age 91, right hemisphere 50.9
Hippocampus, CA1
nTPM: 97.9
2749 Male, age 80, left hemisphere 159.6
2082 Female, age 91, right hemisphere 103.8
2045 Male, age 76, both hemispheres 92.0
1873 Female, age 85, both hemispheres 74.6
2527 Male, age 74, both hemispheres 59.5
Hippocampus, CA2
nTPM: 70.2
1963 Male, age 80, left hemisphere 109.2
1892 Male, age 76, both hemispheres 73.1
2113 Female, age 91, right hemisphere 65.5
1940 Female, age 85, left hemisphere 61.6
2437 Female, age 94, left hemisphere 61.0
2249 Male, age 74, both hemispheres 50.9
Hippocampus, CA3
nTPM: 68.1
2137 Male, age 80, left hemisphere 105.7
1867 Male, age 76, both hemispheres 73.6
2620 Female, age 94, left hemisphere 71.7
2861 Female, age 67, both hemispheres 57.7
1891 Female, age 85, both hemispheres 51.1
2436 Male, age 74, both hemispheres 49.1
Parahippocampal cortex
nTPM: 70.1
1933 Female, age 85, both hemispheres 103.8
1990 Female, age 91, right hemisphere 91.2
1850 Male, age 80, both hemispheres 81.2
2250 Female, age 67, right hemisphere 80.9
2245 Female, age 91, both hemispheres 63.8
2622 Female, age 67, right hemisphere 59.7
2692 Male, age 74, both hemispheres 59.4
2693 Female, age 94, both hemispheres 55.1
2532 Female, age 72, left hemisphere 53.4
2018 Male, age 76, both hemispheres 52.8
Perirhinal gyrus
nTPM: 87.5
1847 Female, age 91, left hemisphere 138.6
1841 Female, age 85, right hemisphere 91.2
1794 Male, age 80, right hemisphere 84.1
2521 Female, age 94, right hemisphere 65.2
2848 Male, age 76, right hemisphere 58.6
Subiculum
nTPM: 54.2
1901 Male, age 80, both hemispheres 65.3
1977 Female, age 85, both hemispheres 61.1
2042 Male, age 76, both hemispheres 55.2
2729 Female, age 91, right hemisphere 52.5
2619 Male, age 74, both hemispheres 47.5
2438 Female, age 94, left hemisphere 43.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 426.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 426.1
Samples: 197

Max nTPM: 1601.9
Min nTPM: 12.3
Std nTPM: 271.9
Median nTPM: 370.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1601.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1279.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1217.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1167.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1099.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1014.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 1010.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 998.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 962.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 952.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 935.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 161.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 161.4
FF:10169-103B7 60 years, female 210.3
FF:10153-102I9 76 years, female 112.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 59.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 40.8
Samples: 4

Max nTPM: 51.1
Min nTPM: 15.7
Sample A Female 46.6
Sample B Female 51.1
Sample C Male 49.8
Sample D Male 15.7
Entorhinal cortex
nTPM: 36.9
Samples: 4

Max nTPM: 55.3
Min nTPM: 30.4
Sample A Female 30.5
Sample B Female 31.5
Sample C Male 55.3
Sample D Male 30.4
Subiculum
nTPM: 59.3
Samples: 4

Max nTPM: 78.3
Min nTPM: 35.2
Sample A Female 78.3
Sample B Female 61.3
Sample C Male 62.3
Sample D Male 35.2
Ventral hippocampus
nTPM: 52.4
Samples: 4

Max nTPM: 76.8
Min nTPM: 39.9
Sample A Female 46.9
Sample B Female 39.9
Sample C Male 76.8
Sample D Male 45.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 200.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 200.1
Samples: 4

Max nTPM: 221.9
Min nTPM: 161.8
Sample A Male 161.8
Sample B Male 221.9
Sample C Female 204.9
Sample D Female 211.9
Hippocampal formation
nTPM: 189.2
Samples: 4

Max nTPM: 230.2
Min nTPM: 132.2
Sample A Male 205.0
Sample B Male 189.5
Sample C Female 132.2
Sample D Female 230.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.3
70546093 Antisense, RP_050623_03_F01, Mouse strain C57BL/6J (56 days, male) 13.3
71924388 Antisense, RP_050623_03_F01, Mouse strain C57BL/6J (56 days, male) 12.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.