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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.1 nTPM
HPA:20.1 nTPM
GTEx:19.6 nTPM
FANTOM5:78.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.1
2586 Male, age 75, left hemisphere 25.3
2019 Male, age 18, unknown 22.3
2666 Male, age 74, left hemisphere 21.3
1827 Male, age 72, unknown 20.5
2828 Female, age 72, unknown 20.1
1833 Male, age 53, unknown 19.1
1830 Male, age 51, unknown 19.0
2219 Male, age 76, both hemispheres 18.3
1870 Female, age 42, unknown 17.8
2411 Female, age 72, unknown 17.5
Dorsal raphe nucleus
nTPM: 16.8
1828 Male, age 53, unknown 18.3
2047 Male, age 72, unknown 17.9
2750 Male, age 76, both hemispheres 17.8
2016 Female, age 72, unknown 15.1
2298 Female, age 72, unknown 15.0
Inferior colliculus
nTPM: 18.5
2849 Male, age 72, unknown 21.5
1890 Male, age 53, unknown 18.4
1848 Female, age 42, unknown 17.4
2097 Female, age 72, unknown 16.8
Median raphe nucleus
nTPM: 19.6
2220 Male, age 76, midline 19.6
Pedunculopontine tegmental nucleus
nTPM: 18.9
2338 Male, age 61, both hemispheres 21.5
2334 Male, age 80, both hemispheres 18.0
1921 Female, age 85, both hemispheres 17.4
Periaquaductal grey, anterior
nTPM: 18.3
1947 Male, age 18, unknown 19.2
2502 Female, age 75, unknown 18.3
1795 Male, age 51, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 17.9
2850 Male, age 76, both hemispheres 20.2
1831 Male, age 72, unknown 18.5
1840 Male, age 53, unknown 16.9
2464 Female, age 72, unknown 15.8
Periaquaductal grey, lateral
nTPM: 18.7
2140 Male, age 76, both hemispheres 20.9
2053 Male, age 18, unknown 18.3
2272 Male, age 74, both hemispheres 16.9
Pretectal area
nTPM: 20.1
1817 Female, age 42, unknown 23.9
1816 Male, age 51, unknown 23.6
1944 Female, age 72, unknown 23.2
2007 Male, age 72, unknown 23.1
2407 Male, age 75, both hemispheres 22.1
1815 Male, age 53, unknown 22.0
2667 Female, age 75, unknown 20.3
2825 Male, age 18, unknown 16.9
2316 Male, age 76, right hemisphere 15.8
2273 Male, age 74, both hemispheres 15.4
2224 Female, age 72, unknown 15.0
Red nucleus
nTPM: 19.7
2823 Male, age 76, right hemisphere 22.7
2584 Male, age 75, left hemisphere 21.9
2785 Male, age 18, unknown 20.7
1904 Male, age 53, unknown 20.2
1865 Male, age 51, unknown 20.0
1954 Female, age 42, unknown 19.8
2769 Male, age 72, unknown 19.6
2725 Female, age 75, unknown 19.2
1821 Female, age 72, unknown 18.9
2588 Male, age 74, left hemisphere 18.6
2227 Male, age 72, unknown 17.6
2503 Female, age 72, unknown 17.6
Substantia nigra
nTPM: 19.0
1889 Female, age 72, unknown 22.9
2583 Male, age 75, right hemisphere 22.5
2665 Male, age 74, both hemispheres 22.3
2590 Female, age 75, unknown 19.9
1851 Male, age 51, unknown 19.2
1916 Female, age 42, unknown 18.2
1941 Male, age 53, unknown 18.2
2699 Male, age 18, unknown 17.9
2409 Female, age 72, unknown 16.1
2241 Male, age 72, unknown 12.4
Superior colliculus
nTPM: 19.6
1913 Female, age 42, unknown 21.8
1995 Male, age 72, unknown 21.3
2664 Male, age 75, both hemispheres 20.8
2087 Female, age 72, unknown 20.1
1796 Male, age 53, unknown 19.7
2261 Male, age 18, unknown 19.7
1895 Male, age 76, right hemisphere 18.9
2587 Male, age 74, left hemisphere 18.4
2668 Female, age 75, unknown 18.3
1839 Male, age 51, unknown 17.1
Ventral tegmental area
nTPM: 17.9
2218 Male, age 76, both hemispheres 19.7
1942 Male, age 51, unknown 18.2
2410 Female, age 72, unknown 18.2
1915 Female, age 42, unknown 17.8
2223 Female, age 72, unknown 17.4
2021 Male, age 53, unknown 16.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.6
Samples: 139

Max nTPM: 38.2
Min nTPM: 11.4
Std nTPM: 3.8
Median nTPM: 19.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 33.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 30.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 27.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 26.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 26.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 25.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 25.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 25.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 25.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 25.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.2
FF:10158-103A5 76 years, female 78.2

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