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GATD1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:35.8 nTPM
HPA:35.8 nTPM
GTEx:32.8 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:59.7 nTPM
Mouse:25.7 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA008812
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.0
2481 Female, age 94, left hemisphere 31.4
2290 Female, age 72, unknown 31.0
1854 Male, age 80, left hemisphere 30.0
2289 Male, age 61, right hemisphere 29.7
1857 Female, age 85, left hemisphere 29.5
2288 Male, age 75, left hemisphere 28.5
1781 Male, age 74, unknown 27.0
2846 Female, age 79, unknown 25.0
Claustrum
nTPM: 32.5
2645 Female, age 72, unknown 39.6
2491 Male, age 75, both hemispheres 34.9
2284 Female, age 91, both hemispheres 34.5
2292 Female, age 85, both hemispheres 34.0
2568 Male, age 61, both hemispheres 32.1
2198 Male, age 80, both hemispheres 31.1
2392 Female, age 94, both hemispheres 29.5
1956 Male, age 74, unknown 28.8
2196 Female, age 79, unknown 27.9
Globus pallidus, externus
nTPM: 35.8
2567 Female, age 72, unknown 39.2
1996 Male, age 80, right hemisphere 38.3
2646 Male, age 61, right hemisphere 37.1
2772 Female, age 79, unknown 34.3
2395 Male, age 75, both hemispheres 30.1
Globus pallidus, internus
nTPM: 34.4
2111 Female, age 85, right hemisphere 39.0
2483 Female, age 94, right hemisphere 37.0
2566 Female, age 72, unknown 36.0
1818 Male, age 74, unknown 34.7
2037 Male, age 80, right hemisphere 34.5
2778 Female, age 91, both hemispheres 29.9
2287 Male, age 75, right hemisphere 29.8
Nucleus accumbens
nTPM: 29.2
2732 Male, age 80, right hemisphere 33.1
2391 Female, age 94, left hemisphere 29.9
2824 Male, age 61, right hemisphere 29.9
1783 Male, age 74, unknown 28.9
1856 Female, age 91, right hemisphere 28.9
2286 Male, age 75, left hemisphere 28.5
1806 Female, age 85, left hemisphere 27.8
2698 Female, age 72, unknown 26.7
Nucleus basalis of Meynert
nTPM: 31.7
2569 Male, age 61, both hemispheres 39.1
2393 Male, age 80, right hemisphere 31.4
2484 Female, age 94, left hemisphere 29.5
2821 Male, age 75, both hemispheres 26.7
Nucleus of the diagonal band
nTPM: 33.0
1979 Male, age 74, unknown 35.5
2029 Male, age 61, right hemisphere 33.3
2775 Male, age 80, right hemisphere 32.2
1812 Female, age 91, both hemispheres 32.0
2195 Female, age 85, both hemispheres 31.8
Olfactory tubercle
nTPM: 32.8
1998 Female, age 91, both hemispheres 33.9
1846 Male, age 80, right hemisphere 33.4
2856 Male, age 75, right hemisphere 32.6
2487 Female, age 94, left hemisphere 31.2
Putamen
nTPM: 31.4
2647 Male, age 75, left hemisphere 37.2
2489 Female, age 72, unknown 34.3
2482 Female, age 94, left hemisphere 32.2
1937 Female, age 91, right hemisphere 29.7
1829 Male, age 74, unknown 29.4
1838 Male, age 80, right hemisphere 29.0
2466 Female, age 79, unknown 27.9
Septal nuclei
nTPM: 34.2
2199 Male, age 80, right hemisphere 39.3
2059 Female, age 85, both hemispheres 38.3
2394 Male, age 61, left hemisphere 36.8
2031 Female, age 72, unknown 33.1
2009 Female, age 91, both hemispheres 32.2
1960 Male, age 74, unknown 31.3
2629 Female, age 94, right hemisphere 28.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.8
Samples: 246

Max nTPM: 53.8
Min nTPM: 12.8
Std nTPM: 7.0
Median nTPM: 32.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 53.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 51.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 50.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 50.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 49.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 48.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 47.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 46.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 45.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 45.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 43.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.6
Samples: 246

Max nTPM: 68.1
Min nTPM: 15.1
Std nTPM: 7.0
Median nTPM: 31.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 68.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 59.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 56.8
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 56.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 51.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 50.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 50.2
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 50.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 46.7
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 46.4
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 45.0
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Brain - Putamen (basal ganglia)
Average nTPM: 31.2
Samples: 205

Max nTPM: 58.9
Min nTPM: 14.2
Std nTPM: 6.6
Median nTPM: 31.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 58.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 53.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 49.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 49.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 47.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 46.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 45.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 45.6
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 45.1
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 43.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 43.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.1
FF:10164-103B2 76 years, female 55.1
Globus pallidus
Scaled Tags Per Million: 47.8
FF:10175-103C4 60 years, female 49.7
FF:10161-103A8 76 years, female 45.8
Nucleus accumbens
Scaled Tags Per Million: 43.3
FF:10037-101F1 23-56 years, mixed 43.3
Putamen
Scaled Tags Per Million: 34.1
FF:10176-103C5 60 years, female 34.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 59.7
Pig sample Sample description nTPM
Caudate
nTPM: 53.5
Samples: 4

Max nTPM: 65.0
Min nTPM: 35.3
Sample A Female 35.3
Sample B Female 65.0
Sample C Male 62.9
Sample D Male 50.8
Putamen
nTPM: 59.7
Samples: 4

Max nTPM: 70.4
Min nTPM: 50.6
Sample A Female 50.6
Sample B Female 55.1
Sample C Male 70.4
Sample D Male 62.6
Septum
nTPM: 45.7
Samples: 4

Max nTPM: 51.4
Min nTPM: 41.5
Sample A Female 42.1
Sample B Female 47.6
Sample C Male 51.4
Sample D Male 41.5
Ventral pallidum
nTPM: 52.2
Samples: 4

Max nTPM: 68.6
Min nTPM: 34.7
Sample A Female 34.7
Sample B Female 61.6
Sample C Male 68.6
Sample D Male 43.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 25.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.6
Samples: 4

Max nTPM: 21.8
Min nTPM: 16.1
Sample A Male 21.0
Sample B Male 21.8
Sample C Female 16.1
Sample D Female 19.5
Septum
nTPM: 25.7
Samples: 4

Max nTPM: 27.1
Min nTPM: 24.4
Sample A Male 27.1
Sample B Male 26.2
Sample C Female 24.4
Sample D Female 25.0
Ventral forebrain
nTPM: 24.8
Samples: 4

Max nTPM: 27.0
Min nTPM: 21.6
Sample A Male 25.4
Sample B Male 25.1
Sample C Female 27.0
Sample D Female 21.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
68158081 Antisense, RP_041116_02_G12, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 0.8
68158081 Antisense, RP_041116_02_G12, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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