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GATD1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.8 nTPM
HPA:41.8 nTPM
GTEx:31.9 nTPM
FANTOM5:41.2 Scaled Tags Per Million
Pig:59.9 nTPM
Mouse:17.9 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.2
2586 Male, age 75, left hemisphere 56.1
2828 Female, age 72, unknown 43.5
1827 Male, age 72, unknown 39.3
2666 Male, age 74, left hemisphere 38.6
2219 Male, age 76, both hemispheres 36.3
2411 Female, age 72, unknown 36.3
1870 Female, age 42, unknown 36.0
2019 Male, age 18, unknown 35.6
1830 Male, age 51, unknown 35.1
1833 Male, age 53, unknown 34.7
Dorsal raphe nucleus
nTPM: 36.0
2047 Male, age 72, unknown 39.9
2016 Female, age 72, unknown 37.4
2298 Female, age 72, unknown 35.6
1828 Male, age 53, unknown 35.3
2750 Male, age 76, both hemispheres 31.7
Inferior colliculus
nTPM: 35.7
1848 Female, age 42, unknown 37.2
1890 Male, age 53, unknown 36.4
2849 Male, age 72, unknown 35.8
2097 Female, age 72, unknown 33.4
Median raphe nucleus
nTPM: 31.4
2220 Male, age 76, midline 31.4
Pedunculopontine tegmental nucleus
nTPM: 33.2
1921 Female, age 85, both hemispheres 35.0
2334 Male, age 80, both hemispheres 33.3
2338 Male, age 61, both hemispheres 31.3
Periaquaductal grey, anterior
nTPM: 41.8
2502 Female, age 75, unknown 44.6
1795 Male, age 51, unknown 42.7
1947 Male, age 18, unknown 38.0
Periaquaductal grey, dorsal
nTPM: 38.1
1831 Male, age 72, unknown 39.6
1840 Male, age 53, unknown 39.4
2464 Female, age 72, unknown 38.0
2850 Male, age 76, both hemispheres 35.6
Periaquaductal grey, lateral
nTPM: 39.0
2053 Male, age 18, unknown 41.0
2140 Male, age 76, both hemispheres 40.6
2272 Male, age 74, both hemispheres 35.3
Pretectal area
nTPM: 38.5
2407 Male, age 75, both hemispheres 41.5
1816 Male, age 51, unknown 40.7
2667 Female, age 75, unknown 40.5
1944 Female, age 72, unknown 39.8
2316 Male, age 76, right hemisphere 38.3
2273 Male, age 74, both hemispheres 37.5
2825 Male, age 18, unknown 37.3
1815 Male, age 53, unknown 37.2
1817 Female, age 42, unknown 37.1
2007 Male, age 72, unknown 36.7
2224 Female, age 72, unknown 36.4
Red nucleus
nTPM: 35.6
2584 Male, age 75, left hemisphere 38.2
2227 Male, age 72, unknown 37.7
2588 Male, age 74, left hemisphere 37.7
2769 Male, age 72, unknown 37.0
2785 Male, age 18, unknown 36.5
2503 Female, age 72, unknown 35.8
2725 Female, age 75, unknown 35.7
1904 Male, age 53, unknown 34.6
1865 Male, age 51, unknown 33.9
1821 Female, age 72, unknown 33.7
1954 Female, age 42, unknown 33.5
2823 Male, age 76, right hemisphere 32.6
Substantia nigra
nTPM: 36.0
1916 Female, age 42, unknown 44.5
1851 Male, age 51, unknown 39.1
2699 Male, age 18, unknown 37.9
2665 Male, age 74, both hemispheres 36.7
2583 Male, age 75, right hemisphere 36.6
1941 Male, age 53, unknown 36.4
2590 Female, age 75, unknown 35.6
1889 Female, age 72, unknown 34.5
2241 Male, age 72, unknown 30.1
2409 Female, age 72, unknown 29.0
Superior colliculus
nTPM: 38.8
2664 Male, age 75, both hemispheres 59.6
2261 Male, age 18, unknown 40.4
1796 Male, age 53, unknown 40.2
2087 Female, age 72, unknown 39.7
1995 Male, age 72, unknown 36.6
1839 Male, age 51, unknown 35.4
1913 Female, age 42, unknown 35.4
2587 Male, age 74, left hemisphere 34.0
2668 Female, age 75, unknown 33.8
1895 Male, age 76, right hemisphere 32.9
Ventral tegmental area
nTPM: 37.6
1915 Female, age 42, unknown 39.9
2021 Male, age 53, unknown 39.7
1942 Male, age 51, unknown 39.2
2410 Female, age 72, unknown 38.1
2218 Male, age 76, both hemispheres 35.3
2223 Female, age 72, unknown 33.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.9
Samples: 139

Max nTPM: 57.8
Min nTPM: 13.8
Std nTPM: 7.5
Median nTPM: 31.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 57.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 53.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 49.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 48.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 45.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 45.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 44.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 44.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 43.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 43.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 42.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.2
FF:10158-103A5 76 years, female 41.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.9
Pig sample Sample description nTPM
Midbrain
nTPM: 59.9
Samples: 4

Max nTPM: 64.3
Min nTPM: 53.0
Sample A Female 64.0
Sample B Female 64.3
Sample C Male 58.2
Sample D Male 53.0
Periaqueductal gray
nTPM: 47.0
Samples: 3

Max nTPM: 57.9
Min nTPM: 37.3
Sample B Female 57.9
Sample C Male 45.8
Sample D Male 37.3
Substantia nigra
nTPM: 56.9
Samples: 4

Max nTPM: 59.9
Min nTPM: 48.8
Sample A Female 59.7
Sample B Female 48.8
Sample C Male 59.0
Sample D Male 59.9
Superior colliculi
nTPM: 52.7
Samples: 4

Max nTPM: 59.9
Min nTPM: 42.3
Sample A Female 59.9
Sample B Female 42.3
Sample C Male 52.8
Sample D Male 55.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 19.6
Min nTPM: 15.9
Sample A Male 19.6
Sample B Male 17.8
Sample C Female 15.9
Sample D Female 18.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68158081 Antisense, RP_041116_02_G12, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas project is funded
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