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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:184.7 nTPM
HPA:184.7 nTPM
GTEx:219.9 nTPM
FANTOM5:94.4 Scaled Tags Per Million
Mouse:140.7 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 184.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 175.1
2411 Female, age 72, unknown 186.4
1870 Female, age 42, unknown 181.4
2828 Female, age 72, unknown 176.9
1833 Male, age 53, unknown 176.6
2219 Male, age 76, both hemispheres 176.4
1827 Male, age 72, unknown 174.4
1830 Male, age 51, unknown 173.4
2666 Male, age 74, left hemisphere 169.0
2586 Male, age 75, left hemisphere 168.5
2019 Male, age 18, unknown 168.4
Dorsal raphe nucleus
nTPM: 179.7
2750 Male, age 76, both hemispheres 187.1
2298 Female, age 72, unknown 183.9
2047 Male, age 72, unknown 181.9
1828 Male, age 53, unknown 173.5
2016 Female, age 72, unknown 172.2
Inferior colliculus
nTPM: 174.1
2849 Male, age 72, unknown 176.6
1848 Female, age 42, unknown 174.2
1890 Male, age 53, unknown 173.2
2097 Female, age 72, unknown 172.2
Median raphe nucleus
nTPM: 180.4
2220 Male, age 76, midline 180.4
Pedunculopontine tegmental nucleus
nTPM: 184.7
2338 Male, age 61, both hemispheres 188.6
2334 Male, age 80, both hemispheres 185.2
1921 Female, age 85, both hemispheres 180.3
Periaquaductal grey, anterior
nTPM: 179.8
1947 Male, age 18, unknown 186.3
2502 Female, age 75, unknown 176.6
1795 Male, age 51, unknown 176.5
Periaquaductal grey, dorsal
nTPM: 172.8
1840 Male, age 53, unknown 179.1
2464 Female, age 72, unknown 174.6
2850 Male, age 76, both hemispheres 171.1
1831 Male, age 72, unknown 166.6
Periaquaductal grey, lateral
nTPM: 170.4
2053 Male, age 18, unknown 172.8
2140 Male, age 76, both hemispheres 169.9
2272 Male, age 74, both hemispheres 168.4
Pretectal area
nTPM: 173.5
2667 Female, age 75, unknown 177.9
2224 Female, age 72, unknown 177.4
1817 Female, age 42, unknown 175.9
2825 Male, age 18, unknown 175.7
1944 Female, age 72, unknown 175.5
1816 Male, age 51, unknown 173.3
2316 Male, age 76, right hemisphere 172.2
2273 Male, age 74, both hemispheres 171.1
1815 Male, age 53, unknown 171.0
2007 Male, age 72, unknown 170.9
2407 Male, age 75, both hemispheres 167.3
Red nucleus
nTPM: 176.5
2725 Female, age 75, unknown 182.6
2503 Female, age 72, unknown 182.4
1865 Male, age 51, unknown 180.9
1904 Male, age 53, unknown 178.8
1954 Female, age 42, unknown 178.7
2769 Male, age 72, unknown 178.0
2823 Male, age 76, right hemisphere 177.3
1821 Female, age 72, unknown 177.2
2227 Male, age 72, unknown 176.6
2785 Male, age 18, unknown 169.8
2588 Male, age 74, left hemisphere 168.0
2584 Male, age 75, left hemisphere 167.1
Substantia nigra
nTPM: 181.2
1916 Female, age 42, unknown 191.6
1851 Male, age 51, unknown 188.4
2241 Male, age 72, unknown 187.6
2409 Female, age 72, unknown 185.7
2699 Male, age 18, unknown 183.7
1889 Female, age 72, unknown 181.1
1941 Male, age 53, unknown 179.5
2590 Female, age 75, unknown 174.2
2665 Male, age 74, both hemispheres 171.8
2583 Male, age 75, right hemisphere 168.6
Superior colliculus
nTPM: 172.1
1913 Female, age 42, unknown 177.0
1895 Male, age 76, right hemisphere 176.5
1796 Male, age 53, unknown 176.0
2587 Male, age 74, left hemisphere 174.3
2261 Male, age 18, unknown 172.2
2087 Female, age 72, unknown 171.9
2668 Female, age 75, unknown 170.6
1995 Male, age 72, unknown 169.4
1839 Male, age 51, unknown 169.0
2664 Male, age 75, both hemispheres 164.4
Ventral tegmental area
nTPM: 182.5
2410 Female, age 72, unknown 191.2
1915 Female, age 42, unknown 188.1
2218 Male, age 76, both hemispheres 181.4
2223 Female, age 72, unknown 178.8
1942 Male, age 51, unknown 178.6
2021 Male, age 53, unknown 176.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 219.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 219.9
Samples: 139

Max nTPM: 531.8
Min nTPM: 99.3
Std nTPM: 65.9
Median nTPM: 208.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 531.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 476.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 449.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 411.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 363.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 347.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 341.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 333.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 330.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 328.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 327.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.4
FF:10158-103A5 76 years, female 94.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 140.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 140.7
Samples: 4

Max nTPM: 155.2
Min nTPM: 126.8
Sample A Male 155.2
Sample B Male 126.8
Sample C Female 131.3
Sample D Female 149.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68744498 Antisense, RP_050208_01_A07, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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