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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:183.6 nTPM
HPA:183.6 nTPM
GTEx:152.2 nTPM
FANTOM5:105.2 Scaled Tags Per Million
Mouse:169.2 nTPM
Allen mouse:0.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 183.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 171.5
2481 Female, age 94, left hemisphere 176.1
1857 Female, age 85, left hemisphere 176.0
2846 Female, age 79, unknown 174.1
2288 Male, age 75, left hemisphere 172.6
1854 Male, age 80, left hemisphere 172.0
2290 Female, age 72, unknown 170.2
1781 Male, age 74, unknown 169.9
2289 Male, age 61, right hemisphere 161.2
Claustrum
nTPM: 165.2
2196 Female, age 79, unknown 170.2
2198 Male, age 80, both hemispheres 169.4
2491 Male, age 75, both hemispheres 167.8
1956 Male, age 74, unknown 167.6
2392 Female, age 94, both hemispheres 167.3
2292 Female, age 85, both hemispheres 165.9
2568 Male, age 61, both hemispheres 160.0
2284 Female, age 91, both hemispheres 159.4
2645 Female, age 72, unknown 159.0
Globus pallidus, externus
nTPM: 178.3
1996 Male, age 80, right hemisphere 186.9
2772 Female, age 79, unknown 184.0
2395 Male, age 75, both hemispheres 182.1
2646 Male, age 61, right hemisphere 174.5
2567 Female, age 72, unknown 163.7
Globus pallidus, internus
nTPM: 183.6
2287 Male, age 75, right hemisphere 195.0
2778 Female, age 91, both hemispheres 191.2
2483 Female, age 94, right hemisphere 190.8
1818 Male, age 74, unknown 179.1
2037 Male, age 80, right hemisphere 178.4
2111 Female, age 85, right hemisphere 178.2
2566 Female, age 72, unknown 172.8
Nucleus accumbens
nTPM: 173.1
2698 Female, age 72, unknown 178.0
2286 Male, age 75, left hemisphere 176.2
2391 Female, age 94, left hemisphere 174.8
1856 Female, age 91, right hemisphere 174.3
1806 Female, age 85, left hemisphere 173.7
1783 Male, age 74, unknown 170.7
2824 Male, age 61, right hemisphere 169.0
2732 Male, age 80, right hemisphere 167.8
Nucleus basalis of Meynert
nTPM: 171.7
2569 Male, age 61, both hemispheres 173.3
2484 Female, age 94, left hemisphere 173.1
2821 Male, age 75, both hemispheres 172.9
2393 Male, age 80, right hemisphere 167.7
Nucleus of the diagonal band
nTPM: 167.8
2775 Male, age 80, right hemisphere 171.8
1812 Female, age 91, both hemispheres 169.3
2195 Female, age 85, both hemispheres 169.3
1979 Male, age 74, unknown 164.5
2029 Male, age 61, right hemisphere 164.4
Olfactory tubercle
nTPM: 166.7
1846 Male, age 80, right hemisphere 175.2
1998 Female, age 91, both hemispheres 168.1
2487 Female, age 94, left hemisphere 162.0
2856 Male, age 75, right hemisphere 161.3
Putamen
nTPM: 170.1
2482 Female, age 94, left hemisphere 183.2
2466 Female, age 79, unknown 171.7
1937 Female, age 91, right hemisphere 169.6
2647 Male, age 75, left hemisphere 169.4
2489 Female, age 72, unknown 166.7
1829 Male, age 74, unknown 165.4
1838 Male, age 80, right hemisphere 164.8
Septal nuclei
nTPM: 168.8
1960 Male, age 74, unknown 176.2
2031 Female, age 72, unknown 173.3
2394 Male, age 61, left hemisphere 169.8
2629 Female, age 94, right hemisphere 166.2
2059 Female, age 85, both hemispheres 166.0
2199 Male, age 80, right hemisphere 165.7
2009 Female, age 91, both hemispheres 164.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 152.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 127.2
Samples: 246

Max nTPM: 318.8
Min nTPM: 58.4
Std nTPM: 38.0
Median nTPM: 118.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 318.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 284.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 282.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 277.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 245.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 232.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 229.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 227.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 223.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 214.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 201.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 147.0
Samples: 246

Max nTPM: 694.0
Min nTPM: 78.6
Std nTPM: 56.6
Median nTPM: 136.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 694.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 445.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 401.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 293.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 293.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 274.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 255.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 239.7
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 233.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 230.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 226.6
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Brain - Putamen (basal ganglia)
Average nTPM: 152.2
Samples: 205

Max nTPM: 396.3
Min nTPM: 70.3
Std nTPM: 41.0
Median nTPM: 145.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 396.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 267.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 261.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 257.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 256.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 250.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 250.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 248.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 242.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 238.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 237.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 65.9
FF:10164-103B2 76 years, female 65.9
Globus pallidus
Scaled Tags Per Million: 105.2
FF:10175-103C4 60 years, female 141.2
FF:10161-103A8 76 years, female 69.2
Nucleus accumbens
Scaled Tags Per Million: 61.2
FF:10037-101F1 23-56 years, mixed 61.2
Putamen
Scaled Tags Per Million: 87.1
FF:10176-103C5 60 years, female 87.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 169.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 162.7
Samples: 4

Max nTPM: 166.0
Min nTPM: 153.7
Sample A Male 165.2
Sample B Male 166.0
Sample C Female 166.0
Sample D Female 153.7
Septum
nTPM: 164.4
Samples: 4

Max nTPM: 182.8
Min nTPM: 150.5
Sample A Male 150.5
Sample B Male 167.3
Sample C Female 182.8
Sample D Female 156.8
Ventral forebrain
nTPM: 169.2
Samples: 4

Max nTPM: 193.9
Min nTPM: 149.6
Sample A Male 169.7
Sample B Male 149.6
Sample C Female 193.9
Sample D Female 163.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
68744498 Antisense, RP_050208_01_A07, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.9
68744498 Antisense, RP_050208_01_A07, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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