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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.9 nTPM
HPA:82.9 nTPM
GTEx:50.8 nTPM
FANTOM5:16.6 Scaled Tags Per Million
Pig:67.1 nTPM
Mouse:58.7 nTPM
Allen mouse:4.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 82.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.2
1781 Male, age 74, unknown 65.3
2289 Male, age 61, right hemisphere 63.0
1857 Female, age 85, left hemisphere 62.8
2481 Female, age 94, left hemisphere 61.3
2290 Female, age 72, unknown 55.1
2288 Male, age 75, left hemisphere 45.4
1854 Male, age 80, left hemisphere 42.5
2846 Female, age 79, unknown 38.1
Claustrum
nTPM: 62.8
2491 Male, age 75, both hemispheres 87.1
2568 Male, age 61, both hemispheres 76.5
2392 Female, age 94, both hemispheres 69.4
2645 Female, age 72, unknown 61.5
1956 Male, age 74, unknown 58.4
2284 Female, age 91, both hemispheres 58.1
2198 Male, age 80, both hemispheres 56.2
2196 Female, age 79, unknown 51.7
2292 Female, age 85, both hemispheres 46.4
Globus pallidus, externus
nTPM: 66.1
2646 Male, age 61, right hemisphere 99.0
1996 Male, age 80, right hemisphere 67.2
2395 Male, age 75, both hemispheres 57.4
2567 Female, age 72, unknown 55.6
2772 Female, age 79, unknown 51.3
Globus pallidus, internus
nTPM: 71.6
2778 Female, age 91, both hemispheres 91.7
2483 Female, age 94, right hemisphere 82.6
2287 Male, age 75, right hemisphere 80.9
2037 Male, age 80, right hemisphere 70.7
2111 Female, age 85, right hemisphere 66.4
1818 Male, age 74, unknown 60.1
2566 Female, age 72, unknown 48.4
Nucleus accumbens
nTPM: 59.2
2824 Male, age 61, right hemisphere 89.6
2391 Female, age 94, left hemisphere 78.3
1856 Female, age 91, right hemisphere 56.6
1783 Male, age 74, unknown 53.7
1806 Female, age 85, left hemisphere 53.5
2698 Female, age 72, unknown 51.1
2286 Male, age 75, left hemisphere 47.6
2732 Male, age 80, right hemisphere 43.5
Nucleus basalis of Meynert
nTPM: 55.9
2569 Male, age 61, both hemispheres 89.1
2393 Male, age 80, right hemisphere 48.8
2484 Female, age 94, left hemisphere 45.8
2821 Male, age 75, both hemispheres 39.8
Nucleus of the diagonal band
nTPM: 82.9
2029 Male, age 61, right hemisphere 97.5
1812 Female, age 91, both hemispheres 93.1
2195 Female, age 85, both hemispheres 89.2
2775 Male, age 80, right hemisphere 79.5
1979 Male, age 74, unknown 55.0
Olfactory tubercle
nTPM: 82.2
2487 Female, age 94, left hemisphere 93.5
2856 Male, age 75, right hemisphere 92.7
1846 Male, age 80, right hemisphere 84.7
1998 Female, age 91, both hemispheres 57.8
Putamen
nTPM: 48.5
1829 Male, age 74, unknown 66.0
1838 Male, age 80, right hemisphere 52.1
2647 Male, age 75, left hemisphere 50.3
2482 Female, age 94, left hemisphere 49.8
1937 Female, age 91, right hemisphere 44.6
2489 Female, age 72, unknown 40.6
2466 Female, age 79, unknown 36.3
Septal nuclei
nTPM: 73.9
2629 Female, age 94, right hemisphere 93.8
1960 Male, age 74, unknown 89.7
2059 Female, age 85, both hemispheres 89.6
2009 Female, age 91, both hemispheres 81.4
2031 Female, age 72, unknown 66.2
2199 Male, age 80, right hemisphere 58.2
2394 Male, age 61, left hemisphere 38.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 50.3
Samples: 246

Max nTPM: 95.5
Min nTPM: 22.0
Std nTPM: 11.0
Median nTPM: 50.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 95.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 88.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 78.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 78.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 76.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 75.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 75.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 74.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 73.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 71.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 71.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 50.8
Samples: 246

Max nTPM: 91.2
Min nTPM: 24.3
Std nTPM: 10.7
Median nTPM: 49.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 91.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 85.3
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 82.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 78.9
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 76.6
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 76.6
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 76.2
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 75.5
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 75.1
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 75.1
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 73.8
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Brain - Putamen (basal ganglia)
Average nTPM: 45.6
Samples: 205

Max nTPM: 96.1
Min nTPM: 24.3
Std nTPM: 10.1
Median nTPM: 43.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 96.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 90.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 73.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 71.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 69.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 67.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 66.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 65.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 65.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 64.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 63.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.1
FF:10164-103B2 76 years, female 14.1
Globus pallidus
Scaled Tags Per Million: 16.6
FF:10161-103A8 76 years, female 18.2
FF:10175-103C4 60 years, female 14.9
Nucleus accumbens
Scaled Tags Per Million: 12.1
FF:10037-101F1 23-56 years, mixed 12.1
Putamen
Scaled Tags Per Million: 8.4
FF:10176-103C5 60 years, female 8.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 67.1
Pig sample Sample description nTPM
Caudate
nTPM: 54.0
Samples: 4

Max nTPM: 58.1
Min nTPM: 50.8
Sample A Female 52.9
Sample B Female 50.8
Sample C Male 58.1
Sample D Male 54.2
Putamen
nTPM: 67.1
Samples: 4

Max nTPM: 78.9
Min nTPM: 57.7
Sample A Female 64.8
Sample B Female 57.7
Sample C Male 78.9
Sample D Male 66.8
Septum
nTPM: 51.1
Samples: 4

Max nTPM: 55.1
Min nTPM: 44.7
Sample A Female 54.1
Sample B Female 50.3
Sample C Male 55.1
Sample D Male 44.7
Ventral pallidum
nTPM: 64.5
Samples: 4

Max nTPM: 71.0
Min nTPM: 57.3
Sample A Female 57.3
Sample B Female 65.7
Sample C Male 71.0
Sample D Male 64.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 58.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 58.7
Samples: 4

Max nTPM: 60.6
Min nTPM: 56.5
Sample A Male 60.6
Sample B Male 57.8
Sample C Female 60.0
Sample D Female 56.5
Septum
nTPM: 33.7
Samples: 4

Max nTPM: 39.6
Min nTPM: 27.1
Sample A Male 39.6
Sample B Male 27.1
Sample C Female 29.1
Sample D Female 39.0
Ventral forebrain
nTPM: 48.8
Samples: 4

Max nTPM: 54.9
Min nTPM: 39.8
Sample A Male 51.2
Sample B Male 49.4
Sample C Female 39.8
Sample D Female 54.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.7
1994 Antisense, RP_Baylor_103380, Mouse strain C57BL/6J (56 days, male) 5.2
69012795 Antisense, RP_050309_01_E04, Mouse strain C57BL/6J (56 days, male) 4.1
1995 Antisense, RP_Baylor_103380, Mouse strain C57BL/6J (56 days, male) 3.5
Pallidum
Expression energy: 3.1
1994 Antisense, RP_Baylor_103380, Mouse strain C57BL/6J (56 days, male) 3.6
69012795 Antisense, RP_050309_01_E04, Mouse strain C57BL/6J (56 days, male) 2.7
1995 Antisense, RP_Baylor_103380, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.