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SH2B1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.8 nTPM
HPA:47.8 nTPM
GTEx:44.5 nTPM
FANTOM5:53.9 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:28.6 nTPM
Allen mouse:8.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.8
2586 Male, age 75, left hemisphere 58.4
2828 Female, age 72, unknown 51.7
2666 Male, age 74, left hemisphere 50.1
2219 Male, age 76, both hemispheres 49.6
1830 Male, age 51, unknown 47.8
1833 Male, age 53, unknown 47.4
2019 Male, age 18, unknown 46.1
1827 Male, age 72, unknown 45.3
1870 Female, age 42, unknown 43.1
2411 Female, age 72, unknown 38.8
Dorsal raphe nucleus
nTPM: 40.0
1828 Male, age 53, unknown 41.5
2750 Male, age 76, both hemispheres 41.5
2047 Male, age 72, unknown 40.3
2016 Female, age 72, unknown 38.9
2298 Female, age 72, unknown 38.1
Inferior colliculus
nTPM: 45.4
2849 Male, age 72, unknown 54.4
1848 Female, age 42, unknown 45.1
1890 Male, age 53, unknown 44.6
2097 Female, age 72, unknown 37.7
Median raphe nucleus
nTPM: 37.6
2220 Male, age 76, midline 37.6
Pedunculopontine tegmental nucleus
nTPM: 40.4
1921 Female, age 85, both hemispheres 41.6
2334 Male, age 80, both hemispheres 41.3
2338 Male, age 61, both hemispheres 38.2
Periaquaductal grey, anterior
nTPM: 46.6
1795 Male, age 51, unknown 49.3
2502 Female, age 75, unknown 48.1
1947 Male, age 18, unknown 42.6
Periaquaductal grey, dorsal
nTPM: 43.5
1831 Male, age 72, unknown 45.2
1840 Male, age 53, unknown 43.2
2464 Female, age 72, unknown 43.0
2850 Male, age 76, both hemispheres 42.6
Periaquaductal grey, lateral
nTPM: 42.4
2053 Male, age 18, unknown 43.7
2272 Male, age 74, both hemispheres 42.1
2140 Male, age 76, both hemispheres 41.4
Pretectal area
nTPM: 46.6
2407 Male, age 75, both hemispheres 51.4
1817 Female, age 42, unknown 49.5
1944 Female, age 72, unknown 49.4
2007 Male, age 72, unknown 49.2
1816 Male, age 51, unknown 48.6
1815 Male, age 53, unknown 48.1
2667 Female, age 75, unknown 47.0
2316 Male, age 76, right hemisphere 44.5
2825 Male, age 18, unknown 43.6
2273 Male, age 74, both hemispheres 41.4
2224 Female, age 72, unknown 39.6
Red nucleus
nTPM: 44.5
2584 Male, age 75, left hemisphere 54.7
2588 Male, age 74, left hemisphere 49.8
2785 Male, age 18, unknown 48.1
2725 Female, age 75, unknown 46.5
2227 Male, age 72, unknown 45.5
2769 Male, age 72, unknown 44.8
2823 Male, age 76, right hemisphere 43.8
1954 Female, age 42, unknown 41.6
1821 Female, age 72, unknown 41.2
1904 Male, age 53, unknown 39.8
1865 Male, age 51, unknown 39.4
2503 Female, age 72, unknown 38.8
Substantia nigra
nTPM: 44.0
2665 Male, age 74, both hemispheres 48.9
2583 Male, age 75, right hemisphere 48.7
2699 Male, age 18, unknown 46.8
1941 Male, age 53, unknown 45.7
1916 Female, age 42, unknown 45.2
1851 Male, age 51, unknown 43.6
1889 Female, age 72, unknown 43.2
2590 Female, age 75, unknown 41.1
2409 Female, age 72, unknown 40.7
2241 Male, age 72, unknown 35.7
Superior colliculus
nTPM: 46.9
2664 Male, age 75, both hemispheres 57.2
1796 Male, age 53, unknown 50.1
2087 Female, age 72, unknown 47.9
1839 Male, age 51, unknown 47.1
2261 Male, age 18, unknown 46.9
1913 Female, age 42, unknown 45.4
2668 Female, age 75, unknown 45.4
1895 Male, age 76, right hemisphere 43.5
1995 Male, age 72, unknown 43.2
2587 Male, age 74, left hemisphere 42.5
Ventral tegmental area
nTPM: 41.8
2410 Female, age 72, unknown 45.4
2218 Male, age 76, both hemispheres 43.4
1942 Male, age 51, unknown 41.8
1915 Female, age 42, unknown 41.4
2021 Male, age 53, unknown 39.4
2223 Female, age 72, unknown 39.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.5
Samples: 139

Max nTPM: 64.8
Min nTPM: 19.5
Std nTPM: 7.1
Median nTPM: 43.4
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 64.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 63.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 60.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 60.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 59.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 59.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 58.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 57.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 56.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 56.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 55.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.9
FF:10158-103A5 76 years, female 53.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.0
Pig sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 23.6
Min nTPM: 13.8
Sample A Female 16.5
Sample B Female 13.8
Sample C Male 23.6
Sample D Male 21.2
Periaqueductal gray
nTPM: 15.4
Samples: 3

Max nTPM: 16.9
Min nTPM: 14.5
Sample B Female 14.7
Sample C Male 16.9
Sample D Male 14.5
Substantia nigra
nTPM: 17.1
Samples: 4

Max nTPM: 19.2
Min nTPM: 13.9
Sample A Female 18.6
Sample B Female 13.9
Sample C Male 19.2
Sample D Male 16.8
Superior colliculi
nTPM: 20.0
Samples: 4

Max nTPM: 23.2
Min nTPM: 15.4
Sample A Female 20.4
Sample B Female 15.4
Sample C Male 21.0
Sample D Male 23.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.6
Samples: 4

Max nTPM: 30.8
Min nTPM: 26.5
Sample A Male 30.8
Sample B Male 26.5
Sample C Female 28.5
Sample D Female 28.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
68799022 Antisense, RP_050217_01_H03, Mouse strain C57BL/6J (56 days, male) 8.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.