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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:112.8 nTPM
HPA:112.8 nTPM
GTEx:58.5 nTPM
FANTOM5:58.6 Scaled Tags Per Million
Pig:9.8 nTPM
Mouse:134.7 nTPM
Allen mouse:12.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 112.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.9
1870 Female, age 42, unknown 106.1
1827 Male, age 72, unknown 105.8
2411 Female, age 72, unknown 104.7
1833 Male, age 53, unknown 103.5
2828 Female, age 72, unknown 103.5
2219 Male, age 76, both hemispheres 103.0
2666 Male, age 74, left hemisphere 102.9
1830 Male, age 51, unknown 102.6
2586 Male, age 75, left hemisphere 100.9
2019 Male, age 18, unknown 95.9
Dorsal raphe nucleus
nTPM: 107.5
2047 Male, age 72, unknown 113.3
2298 Female, age 72, unknown 111.6
2750 Male, age 76, both hemispheres 106.1
1828 Male, age 53, unknown 103.5
2016 Female, age 72, unknown 102.9
Inferior colliculus
nTPM: 101.3
2849 Male, age 72, unknown 104.7
2097 Female, age 72, unknown 100.8
1890 Male, age 53, unknown 100.2
1848 Female, age 42, unknown 99.4
Median raphe nucleus
nTPM: 112.8
2220 Male, age 76, midline 112.8
Pedunculopontine tegmental nucleus
nTPM: 103.7
1921 Female, age 85, both hemispheres 107.8
2334 Male, age 80, both hemispheres 101.7
2338 Male, age 61, both hemispheres 101.5
Periaquaductal grey, anterior
nTPM: 103.3
1947 Male, age 18, unknown 105.5
1795 Male, age 51, unknown 105.2
2502 Female, age 75, unknown 99.2
Periaquaductal grey, dorsal
nTPM: 108.7
2850 Male, age 76, both hemispheres 114.7
1840 Male, age 53, unknown 111.9
1831 Male, age 72, unknown 104.9
2464 Female, age 72, unknown 103.3
Periaquaductal grey, lateral
nTPM: 110.6
2140 Male, age 76, both hemispheres 113.5
2272 Male, age 74, both hemispheres 109.9
2053 Male, age 18, unknown 108.3
Pretectal area
nTPM: 103.7
2825 Male, age 18, unknown 111.0
2224 Female, age 72, unknown 110.5
2273 Male, age 74, both hemispheres 108.6
2316 Male, age 76, right hemisphere 106.6
2407 Male, age 75, both hemispheres 106.4
2667 Female, age 75, unknown 104.6
1816 Male, age 51, unknown 100.3
1944 Female, age 72, unknown 99.8
1815 Male, age 53, unknown 99.2
1817 Female, age 42, unknown 97.1
2007 Male, age 72, unknown 96.2
Red nucleus
nTPM: 101.4
2725 Female, age 75, unknown 104.5
2588 Male, age 74, left hemisphere 103.6
1904 Male, age 53, unknown 102.9
1865 Male, age 51, unknown 102.3
2823 Male, age 76, right hemisphere 102.3
2227 Male, age 72, unknown 102.2
2769 Male, age 72, unknown 102.0
2584 Male, age 75, left hemisphere 101.3
2503 Female, age 72, unknown 100.8
1821 Female, age 72, unknown 100.5
1954 Female, age 42, unknown 99.2
2785 Male, age 18, unknown 95.2
Substantia nigra
nTPM: 101.2
2699 Male, age 18, unknown 108.5
2590 Female, age 75, unknown 102.7
2583 Male, age 75, right hemisphere 102.0
1851 Male, age 51, unknown 101.6
1916 Female, age 42, unknown 101.6
2665 Male, age 74, both hemispheres 101.2
2241 Male, age 72, unknown 100.3
2409 Female, age 72, unknown 100.2
1889 Female, age 72, unknown 97.2
1941 Male, age 53, unknown 97.1
Superior colliculus
nTPM: 101.9
1796 Male, age 53, unknown 105.2
2664 Male, age 75, both hemispheres 103.4
2261 Male, age 18, unknown 102.9
1839 Male, age 51, unknown 102.0
1895 Male, age 76, right hemisphere 101.9
1913 Female, age 42, unknown 101.2
2587 Male, age 74, left hemisphere 101.2
1995 Male, age 72, unknown 100.9
2087 Female, age 72, unknown 100.3
2668 Female, age 75, unknown 99.9
Ventral tegmental area
nTPM: 104.6
2021 Male, age 53, unknown 109.9
2223 Female, age 72, unknown 105.8
2218 Male, age 76, both hemispheres 104.9
1915 Female, age 42, unknown 104.2
1942 Male, age 51, unknown 103.8
2410 Female, age 72, unknown 98.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.5
Samples: 139

Max nTPM: 118.1
Min nTPM: 30.8
Std nTPM: 12.8
Median nTPM: 57.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 118.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 106.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 98.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 92.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 84.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 82.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 77.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 76.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 76.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 76.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 75.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.6
FF:10158-103A5 76 years, female 58.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.8
Pig sample Sample description nTPM
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 12.1
Min nTPM: 7.4
Sample A Female 12.1
Sample B Female 9.2
Sample C Male 10.4
Sample D Male 7.4
Periaqueductal gray
nTPM: 8.6
Samples: 3

Max nTPM: 9.6
Min nTPM: 7.2
Sample B Female 7.2
Sample C Male 9.6
Sample D Male 9.0
Substantia nigra
nTPM: 9.6
Samples: 4

Max nTPM: 12.3
Min nTPM: 7.5
Sample A Female 12.3
Sample B Female 7.5
Sample C Male 10.9
Sample D Male 7.8
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 9.5
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 9.5
Sample C Male 8.8
Sample D Male 6.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 134.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.7
Samples: 4

Max nTPM: 141.5
Min nTPM: 125.1
Sample A Male 141.5
Sample B Male 133.6
Sample C Female 125.1
Sample D Female 138.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.7
77465028 Antisense, RP_070129_03_A03, Mouse strain C57BL/6J (56 days, male) 12.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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