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CTXN1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:199.1 nTPM
HPA:199.1 nTPM
GTEx:497.9 nTPM
FANTOM5:309.0 Scaled Tags Per Million
Pig:402.8 nTPM
Mouse:480.1 nTPM
Allen mouse:20.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016669
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 199.1
Sample id Sample description nTPM
Hippocampus
nTPM: 169.5
2621 Female, age 67, right hemisphere 246.6
1911 Female, age 85, right hemisphere 205.7
2529 Female, age 94, left hemisphere 157.2
1855 Male, age 76, left hemisphere 146.1
2148 Female, age 91, left hemisphere 142.3
1898 Male, age 80, left hemisphere 119.1
Dentate gyrus
nTPM: 136.3
2531 Female, age 67, both hemispheres 223.5
1927 Female, age 91, both hemispheres 155.4
2530 Female, age 94, left hemisphere 123.0
2246 Female, age 85, both hemispheres 121.5
2010 Male, age 76, both hemispheres 121.4
2528 Male, age 74, both hemispheres 73.3
Entorhinal gyrus
nTPM: 120.3
2613 Female, age 94, left hemisphere 216.0
2764 Male, age 80, right hemisphere 165.3
1787 Male, age 76, left hemisphere 102.2
1938 Female, age 85, left hemisphere 98.4
2686 Male, age 75, right hemisphere 84.0
2117 Female, age 91, right hemisphere 55.9
Hippocampus, CA1
nTPM: 197.2
2749 Male, age 80, left hemisphere 391.2
2045 Male, age 76, both hemispheres 178.6
2527 Male, age 74, both hemispheres 170.9
2082 Female, age 91, right hemisphere 154.0
1873 Female, age 85, both hemispheres 91.5
Hippocampus, CA2
nTPM: 123.9
2113 Female, age 91, right hemisphere 195.2
2249 Male, age 74, both hemispheres 148.3
1940 Female, age 85, left hemisphere 123.9
1892 Male, age 76, both hemispheres 120.7
1963 Male, age 80, left hemisphere 87.9
2437 Female, age 94, left hemisphere 67.4
Hippocampus, CA3
nTPM: 199.1
2137 Male, age 80, left hemisphere 431.8
2861 Female, age 67, both hemispheres 296.6
2620 Female, age 94, left hemisphere 191.2
1867 Male, age 76, both hemispheres 149.0
2436 Male, age 74, both hemispheres 77.6
1891 Female, age 85, both hemispheres 48.6
Parahippocampal cortex
nTPM: 136.6
2245 Female, age 91, both hemispheres 356.3
2622 Female, age 67, right hemisphere 179.3
2018 Male, age 76, both hemispheres 157.7
2532 Female, age 72, left hemisphere 144.4
2250 Female, age 67, right hemisphere 132.9
1933 Female, age 85, both hemispheres 111.2
2693 Female, age 94, both hemispheres 87.0
1850 Male, age 80, both hemispheres 85.0
2692 Male, age 74, both hemispheres 64.0
1990 Female, age 91, right hemisphere 48.5
Perirhinal gyrus
nTPM: 127.5
1847 Female, age 91, left hemisphere 142.1
2521 Female, age 94, right hemisphere 140.4
1794 Male, age 80, right hemisphere 134.7
2848 Male, age 76, right hemisphere 123.2
1841 Female, age 85, right hemisphere 97.3
Subiculum
nTPM: 99.8
2042 Male, age 76, both hemispheres 165.2
1901 Male, age 80, both hemispheres 154.5
2729 Female, age 91, right hemisphere 96.7
1977 Female, age 85, both hemispheres 90.7
2619 Male, age 74, both hemispheres 64.3
2438 Female, age 94, left hemisphere 27.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 497.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 497.9
Samples: 197

Max nTPM: 2031.4
Min nTPM: 28.1
Std nTPM: 347.9
Median nTPM: 400.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 2031.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1736.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1699.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1536.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1479.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1380.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1375.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 1338.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1332.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 1262.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1253.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 309.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 309.0
FF:10169-103B7 60 years, female 384.0
FF:10153-102I9 76 years, female 234.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 402.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 295.4
Samples: 4

Max nTPM: 428.8
Min nTPM: 198.1
Sample A Female 428.8
Sample B Female 305.9
Sample C Male 248.8
Sample D Male 198.1
Entorhinal cortex
nTPM: 402.8
Samples: 4

Max nTPM: 529.7
Min nTPM: 293.9
Sample A Female 442.0
Sample B Female 293.9
Sample C Male 529.7
Sample D Male 345.4
Subiculum
nTPM: 268.2
Samples: 4

Max nTPM: 335.7
Min nTPM: 217.9
Sample A Female 335.7
Sample B Female 217.9
Sample C Male 256.6
Sample D Male 262.4
Ventral hippocampus
nTPM: 272.5
Samples: 4

Max nTPM: 454.8
Min nTPM: 164.9
Sample A Female 164.9
Sample B Female 185.2
Sample C Male 284.9
Sample D Male 454.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 480.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 480.2
Samples: 4

Max nTPM: 512.5
Min nTPM: 461.5
Sample A Male 461.5
Sample B Male 481.1
Sample C Female 465.5
Sample D Female 512.5
Hippocampal formation
nTPM: 415.6
Samples: 4

Max nTPM: 484.3
Min nTPM: 389.5
Sample A Male 484.3
Sample B Male 394.0
Sample C Female 389.5
Sample D Female 394.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 20.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 20.6
74586669 Antisense, RP_051214_01_B09, Mouse strain C57BL/6J (56 days, male) 22.3
69015811 Antisense, RP_050315_01_G04, Mouse strain C57BL/6J (56 days, male) 18.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.