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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.0 nTPM
HPA:34.0 nTPM
GTEx:44.0 nTPM
FANTOM5:86.8 Scaled Tags Per Million
Pig:9.0 nTPM
Mouse:1.8 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.5
2666 Male, age 74, left hemisphere 38.9
2019 Male, age 18, unknown 38.4
2828 Female, age 72, unknown 30.9
1833 Male, age 53, unknown 30.1
2411 Female, age 72, unknown 28.9
1830 Male, age 51, unknown 27.5
1870 Female, age 42, unknown 27.1
2586 Male, age 75, left hemisphere 26.6
1827 Male, age 72, unknown 24.6
2219 Male, age 76, both hemispheres 21.8
Dorsal raphe nucleus
nTPM: 27.3
2750 Male, age 76, both hemispheres 30.5
1828 Male, age 53, unknown 29.7
2016 Female, age 72, unknown 25.8
2047 Male, age 72, unknown 25.7
2298 Female, age 72, unknown 24.9
Inferior colliculus
nTPM: 27.5
2097 Female, age 72, unknown 32.7
1890 Male, age 53, unknown 27.8
1848 Female, age 42, unknown 25.8
2849 Male, age 72, unknown 23.7
Median raphe nucleus
nTPM: 25.7
2220 Male, age 76, midline 25.7
Pedunculopontine tegmental nucleus
nTPM: 29.0
2334 Male, age 80, both hemispheres 31.0
2338 Male, age 61, both hemispheres 30.5
1921 Female, age 85, both hemispheres 25.3
Periaquaductal grey, anterior
nTPM: 25.7
2502 Female, age 75, unknown 29.6
1947 Male, age 18, unknown 24.1
1795 Male, age 51, unknown 23.5
Periaquaductal grey, dorsal
nTPM: 23.1
2464 Female, age 72, unknown 27.2
1831 Male, age 72, unknown 24.5
1840 Male, age 53, unknown 20.4
2850 Male, age 76, both hemispheres 20.4
Periaquaductal grey, lateral
nTPM: 22.3
2053 Male, age 18, unknown 22.9
2272 Male, age 74, both hemispheres 22.7
2140 Male, age 76, both hemispheres 21.4
Pretectal area
nTPM: 26.2
1817 Female, age 42, unknown 35.6
2007 Male, age 72, unknown 34.3
1815 Male, age 53, unknown 28.9
2316 Male, age 76, right hemisphere 26.9
1944 Female, age 72, unknown 26.6
1816 Male, age 51, unknown 26.4
2667 Female, age 75, unknown 25.3
2224 Female, age 72, unknown 24.9
2825 Male, age 18, unknown 21.1
2273 Male, age 74, both hemispheres 19.5
2407 Male, age 75, both hemispheres 19.2
Red nucleus
nTPM: 34.0
1904 Male, age 53, unknown 39.5
2785 Male, age 18, unknown 38.7
2588 Male, age 74, left hemisphere 38.1
1954 Female, age 42, unknown 37.6
1821 Female, age 72, unknown 35.6
2769 Male, age 72, unknown 33.7
2227 Male, age 72, unknown 33.4
2823 Male, age 76, right hemisphere 33.3
1865 Male, age 51, unknown 32.5
2503 Female, age 72, unknown 31.1
2584 Male, age 75, left hemisphere 27.5
2725 Female, age 75, unknown 27.3
Substantia nigra
nTPM: 28.3
2665 Male, age 74, both hemispheres 41.0
1851 Male, age 51, unknown 29.6
2241 Male, age 72, unknown 29.1
1889 Female, age 72, unknown 28.8
2409 Female, age 72, unknown 26.7
2590 Female, age 75, unknown 26.1
2583 Male, age 75, right hemisphere 25.8
1941 Male, age 53, unknown 25.7
1916 Female, age 42, unknown 25.4
2699 Male, age 18, unknown 24.4
Superior colliculus
nTPM: 25.7
2587 Male, age 74, left hemisphere 29.2
2087 Female, age 72, unknown 28.4
2668 Female, age 75, unknown 28.4
1895 Male, age 76, right hemisphere 28.0
2261 Male, age 18, unknown 25.6
1839 Male, age 51, unknown 25.3
1796 Male, age 53, unknown 24.5
1995 Male, age 72, unknown 24.3
1913 Female, age 42, unknown 23.4
2664 Male, age 75, both hemispheres 20.0
Ventral tegmental area
nTPM: 26.7
2218 Male, age 76, both hemispheres 30.4
1942 Male, age 51, unknown 28.1
2223 Female, age 72, unknown 27.4
2410 Female, age 72, unknown 27.1
1915 Female, age 42, unknown 24.4
2021 Male, age 53, unknown 22.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.0
Samples: 139

Max nTPM: 206.4
Min nTPM: 5.9
Std nTPM: 35.0
Median nTPM: 34.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 206.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 183.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 153.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 120.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 120.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 115.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 113.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 104.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 103.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 102.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 97.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.8
FF:10158-103A5 76 years, female 86.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.0
Pig sample Sample description nTPM
Midbrain
nTPM: 8.5
Samples: 4

Max nTPM: 13.0
Min nTPM: 4.8
Sample A Female 9.4
Sample B Female 4.8
Sample C Male 13.0
Sample D Male 6.6
Periaqueductal gray
nTPM: 5.6
Samples: 3

Max nTPM: 7.9
Min nTPM: 4.1
Sample B Female 4.8
Sample C Male 7.9
Sample D Male 4.1
Substantia nigra
nTPM: 8.3
Samples: 4

Max nTPM: 10.8
Min nTPM: 6.0
Sample A Female 8.6
Sample B Female 6.0
Sample C Male 10.8
Sample D Male 7.8
Superior colliculi
nTPM: 9.0
Samples: 4

Max nTPM: 13.7
Min nTPM: 5.0
Sample A Female 8.7
Sample B Female 5.0
Sample C Male 13.7
Sample D Male 8.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.8
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.3
Sample A Male 1.3
Sample B Male 1.9
Sample C Female 1.7
Sample D Female 2.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71213677 Antisense, RP_050816_04_D07, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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