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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.4 nTPM
HPA:77.4 nTPM
GTEx:86.1 nTPM
FANTOM5:124.6 Scaled Tags Per Million
Pig:34.1 nTPM
Mouse:67.3 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.4
2411 Female, age 72, unknown 74.0
2019 Male, age 18, unknown 73.1
2828 Female, age 72, unknown 72.5
2219 Male, age 76, both hemispheres 71.9
1870 Female, age 42, unknown 71.2
1827 Male, age 72, unknown 70.3
1833 Male, age 53, unknown 69.7
2586 Male, age 75, left hemisphere 68.6
2666 Male, age 74, left hemisphere 66.5
1830 Male, age 51, unknown 66.2
Dorsal raphe nucleus
nTPM: 73.1
2298 Female, age 72, unknown 78.9
1828 Male, age 53, unknown 73.1
2047 Male, age 72, unknown 72.2
2750 Male, age 76, both hemispheres 71.3
2016 Female, age 72, unknown 70.2
Inferior colliculus
nTPM: 68.8
1848 Female, age 42, unknown 69.5
2097 Female, age 72, unknown 69.4
1890 Male, age 53, unknown 68.9
2849 Male, age 72, unknown 67.3
Median raphe nucleus
nTPM: 68.8
2220 Male, age 76, midline 68.8
Pedunculopontine tegmental nucleus
nTPM: 69.7
2334 Male, age 80, both hemispheres 71.9
1921 Female, age 85, both hemispheres 69.7
2338 Male, age 61, both hemispheres 67.4
Periaquaductal grey, anterior
nTPM: 70.3
1795 Male, age 51, unknown 72.5
1947 Male, age 18, unknown 71.5
2502 Female, age 75, unknown 67.0
Periaquaductal grey, dorsal
nTPM: 66.8
2850 Male, age 76, both hemispheres 69.6
1840 Male, age 53, unknown 68.0
2464 Female, age 72, unknown 66.7
1831 Male, age 72, unknown 62.9
Periaquaductal grey, lateral
nTPM: 69.2
2272 Male, age 74, both hemispheres 77.9
2053 Male, age 18, unknown 65.4
2140 Male, age 76, both hemispheres 64.4
Pretectal area
nTPM: 71.8
2667 Female, age 75, unknown 78.7
1817 Female, age 42, unknown 77.2
2273 Male, age 74, both hemispheres 76.3
2007 Male, age 72, unknown 74.2
1816 Male, age 51, unknown 73.4
1944 Female, age 72, unknown 73.4
1815 Male, age 53, unknown 73.3
2224 Female, age 72, unknown 71.3
2825 Male, age 18, unknown 67.1
2407 Male, age 75, both hemispheres 63.1
2316 Male, age 76, right hemisphere 61.7
Red nucleus
nTPM: 72.8
1821 Female, age 72, unknown 80.1
2503 Female, age 72, unknown 77.1
2725 Female, age 75, unknown 75.6
2769 Male, age 72, unknown 75.0
1904 Male, age 53, unknown 74.8
1954 Female, age 42, unknown 74.4
1865 Male, age 51, unknown 73.7
2227 Male, age 72, unknown 72.4
2785 Male, age 18, unknown 71.4
2823 Male, age 76, right hemisphere 68.5
2588 Male, age 74, left hemisphere 67.0
2584 Male, age 75, left hemisphere 63.7
Substantia nigra
nTPM: 77.4
1916 Female, age 42, unknown 93.6
1851 Male, age 51, unknown 85.1
2699 Male, age 18, unknown 80.4
2241 Male, age 72, unknown 79.9
1889 Female, age 72, unknown 76.8
1941 Male, age 53, unknown 74.6
2409 Female, age 72, unknown 73.8
2590 Female, age 75, unknown 71.5
2665 Male, age 74, both hemispheres 70.2
2583 Male, age 75, right hemisphere 68.5
Superior colliculus
nTPM: 68.3
2087 Female, age 72, unknown 72.1
1796 Male, age 53, unknown 71.8
2587 Male, age 74, left hemisphere 71.0
2261 Male, age 18, unknown 70.5
1995 Male, age 72, unknown 67.9
2668 Female, age 75, unknown 67.2
1913 Female, age 42, unknown 67.0
1895 Male, age 76, right hemisphere 66.8
1839 Male, age 51, unknown 65.4
2664 Male, age 75, both hemispheres 63.2
Ventral tegmental area
nTPM: 74.7
2410 Female, age 72, unknown 83.1
1915 Female, age 42, unknown 80.7
2218 Male, age 76, both hemispheres 77.0
1942 Male, age 51, unknown 70.1
2223 Female, age 72, unknown 69.6
2021 Male, age 53, unknown 67.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 86.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.1
Samples: 139

Max nTPM: 183.6
Min nTPM: 41.3
Std nTPM: 24.2
Median nTPM: 80.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 183.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 179.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 160.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 159.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 156.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 147.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 135.1
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 131.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 129.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 127.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 126.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 124.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 124.6
FF:10158-103A5 76 years, female 124.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.1
Pig sample Sample description nTPM
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 39.3
Min nTPM: 25.1
Sample A Female 34.3
Sample B Female 25.1
Sample C Male 39.3
Sample D Male 25.5
Periaqueductal gray
nTPM: 22.5
Samples: 3

Max nTPM: 26.0
Min nTPM: 19.9
Sample B Female 21.5
Sample C Male 26.0
Sample D Male 19.9
Substantia nigra
nTPM: 27.8
Samples: 4

Max nTPM: 36.6
Min nTPM: 20.1
Sample A Female 36.6
Sample B Female 20.1
Sample C Male 30.1
Sample D Male 24.2
Superior colliculi
nTPM: 34.1
Samples: 4

Max nTPM: 42.5
Min nTPM: 26.6
Sample A Female 36.8
Sample B Female 26.6
Sample C Male 42.5
Sample D Male 30.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.3
Samples: 4

Max nTPM: 72.2
Min nTPM: 64.4
Sample A Male 64.4
Sample B Male 65.5
Sample C Female 67.2
Sample D Female 72.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
70192129 Antisense, RP_050517_01_C12, Mouse strain C57BL/6J (56 days, male) 3.9
70919651 Antisense, RP_050713_01_G11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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