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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA:14.1 nTPM
GTEx:9.6 nTPM
FANTOM5:24.6 Scaled Tags Per Million
Pig:1.9 nTPM
Mouse:14.9 nTPM
Allen mouse:0.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.0
1781 Male, age 74, unknown 13.7
1854 Male, age 80, left hemisphere 13.4
2289 Male, age 61, right hemisphere 13.2
2846 Female, age 79, unknown 13.0
2481 Female, age 94, left hemisphere 12.9
2288 Male, age 75, left hemisphere 12.8
1857 Female, age 85, left hemisphere 12.7
2290 Female, age 72, unknown 12.3
Claustrum
nTPM: 14.1
2568 Male, age 61, both hemispheres 15.5
2645 Female, age 72, unknown 14.6
2196 Female, age 79, unknown 14.1
2392 Female, age 94, both hemispheres 14.1
2198 Male, age 80, both hemispheres 13.8
2292 Female, age 85, both hemispheres 13.8
2491 Male, age 75, both hemispheres 13.7
1956 Male, age 74, unknown 13.4
2284 Female, age 91, both hemispheres 13.4
Globus pallidus, externus
nTPM: 12.9
2567 Female, age 72, unknown 15.9
2646 Male, age 61, right hemisphere 13.6
2395 Male, age 75, both hemispheres 12.4
1996 Male, age 80, right hemisphere 11.3
2772 Female, age 79, unknown 11.2
Globus pallidus, internus
nTPM: 12.9
2566 Female, age 72, unknown 13.9
2111 Female, age 85, right hemisphere 13.8
2778 Female, age 91, both hemispheres 13.7
1818 Male, age 74, unknown 13.3
2037 Male, age 80, right hemisphere 12.2
2483 Female, age 94, right hemisphere 12.1
2287 Male, age 75, right hemisphere 11.0
Nucleus accumbens
nTPM: 12.6
2732 Male, age 80, right hemisphere 13.7
1783 Male, age 74, unknown 13.1
2698 Female, age 72, unknown 13.1
1856 Female, age 91, right hemisphere 12.8
2824 Male, age 61, right hemisphere 12.8
1806 Female, age 85, left hemisphere 12.3
2286 Male, age 75, left hemisphere 11.5
2391 Female, age 94, left hemisphere 11.5
Nucleus basalis of Meynert
nTPM: 12.7
2393 Male, age 80, right hemisphere 13.3
2569 Male, age 61, both hemispheres 13.1
2821 Male, age 75, both hemispheres 12.4
2484 Female, age 94, left hemisphere 12.0
Nucleus of the diagonal band
nTPM: 12.8
1979 Male, age 74, unknown 13.3
2029 Male, age 61, right hemisphere 13.2
2195 Female, age 85, both hemispheres 12.8
2775 Male, age 80, right hemisphere 12.5
1812 Female, age 91, both hemispheres 11.9
Olfactory tubercle
nTPM: 13.2
2487 Female, age 94, left hemisphere 14.0
1846 Male, age 80, right hemisphere 13.3
2856 Male, age 75, right hemisphere 13.3
1998 Female, age 91, both hemispheres 12.5
Putamen
nTPM: 13.2
1838 Male, age 80, right hemisphere 14.4
2489 Female, age 72, unknown 14.1
2647 Male, age 75, left hemisphere 13.4
2466 Female, age 79, unknown 13.1
1937 Female, age 91, right hemisphere 13.0
2482 Female, age 94, left hemisphere 12.4
1829 Male, age 74, unknown 11.9
Septal nuclei
nTPM: 12.8
2031 Female, age 72, unknown 13.3
2059 Female, age 85, both hemispheres 13.2
2009 Female, age 91, both hemispheres 13.0
2199 Male, age 80, right hemisphere 12.9
2629 Female, age 94, right hemisphere 12.9
1960 Male, age 74, unknown 12.2
2394 Male, age 61, left hemisphere 12.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.5
Samples: 246

Max nTPM: 14.9
Min nTPM: 1.8
Std nTPM: 2.0
Median nTPM: 8.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 14.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 14.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 13.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 13.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 13.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 13.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 13.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 12.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 12.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 12.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 12.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.6
Samples: 246

Max nTPM: 17.4
Min nTPM: 3.4
Std nTPM: 2.5
Median nTPM: 9.3
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 17.4
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 16.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 16.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 15.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 15.8
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 15.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 15.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 15.2
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 15.1
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 15.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 15.1
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Brain - Putamen (basal ganglia)
Average nTPM: 8.3
Samples: 205

Max nTPM: 17.8
Min nTPM: 2.9
Std nTPM: 2.2
Median nTPM: 8.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 17.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 16.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 14.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 13.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 13.0
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 13.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 12.7
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 12.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 11.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 11.5
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 11.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.4
FF:10164-103B2 76 years, female 19.4
Globus pallidus
Scaled Tags Per Million: 18.2
FF:10161-103A8 76 years, female 18.2
FF:10175-103C4 60 years, female 18.1
Nucleus accumbens
Scaled Tags Per Million: 24.6
FF:10037-101F1 23-56 years, mixed 24.6
Putamen
Scaled Tags Per Million: 14.9
FF:10176-103C5 60 years, female 14.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.9
Pig sample Sample description nTPM
Caudate
nTPM: 1.8
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.3
Sample A Female 1.9
Sample B Female 2.0
Sample C Male 2.1
Sample D Male 1.3
Putamen
nTPM: 1.8
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 1.9
Sample C Male 1.7
Sample D Male 1.7
Septum
nTPM: 1.9
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.5
Sample A Female 2.0
Sample B Female 1.5
Sample C Male 2.4
Sample D Male 1.6
Ventral pallidum
nTPM: 1.7
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.5
Sample A Female 1.7
Sample B Female 1.5
Sample C Male 2.1
Sample D Male 1.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.8
Samples: 4

Max nTPM: 14.0
Min nTPM: 11.9
Sample A Male 13.1
Sample B Male 12.3
Sample C Female 11.9
Sample D Female 14.0
Septum
nTPM: 13.6
Samples: 4

Max nTPM: 14.8
Min nTPM: 12.2
Sample A Male 14.8
Sample B Male 13.8
Sample C Female 12.2
Sample D Female 13.6
Ventral forebrain
nTPM: 14.9
Samples: 4

Max nTPM: 17.0
Min nTPM: 13.9
Sample A Male 13.9
Sample B Male 17.0
Sample C Female 14.1
Sample D Female 14.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
69015757 Antisense, RP_050315_01_F06, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.5
69015757 Antisense, RP_050315_01_F06, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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