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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.9 nTPM
HPA:18.9 nTPM
GTEx:22.5 nTPM
FANTOM5:55.4 Scaled Tags Per Million
Pig:24.3 nTPM
Mouse:32.3 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 18.9
Sample id Sample description nTPM
Hippocampus
nTPM: 14.7
1855 Male, age 76, left hemisphere 18.0
2148 Female, age 91, left hemisphere 15.2
2621 Female, age 67, right hemisphere 15.1
2529 Female, age 94, left hemisphere 14.9
1911 Female, age 85, right hemisphere 13.6
1898 Male, age 80, left hemisphere 11.2
Dentate gyrus
nTPM: 16.0
2010 Male, age 76, both hemispheres 20.6
2531 Female, age 67, both hemispheres 18.4
2528 Male, age 74, both hemispheres 16.3
2246 Female, age 85, both hemispheres 15.7
2530 Female, age 94, left hemisphere 12.8
1927 Female, age 91, both hemispheres 12.2
Entorhinal gyrus
nTPM: 17.6
1787 Male, age 76, left hemisphere 20.1
2686 Male, age 75, right hemisphere 19.9
2613 Female, age 94, left hemisphere 18.5
2764 Male, age 80, right hemisphere 16.9
2117 Female, age 91, right hemisphere 16.3
1938 Female, age 85, left hemisphere 14.1
Hippocampus, CA1
nTPM: 16.4
2045 Male, age 76, both hemispheres 21.1
2082 Female, age 91, right hemisphere 17.0
2527 Male, age 74, both hemispheres 15.5
2749 Male, age 80, left hemisphere 15.4
1873 Female, age 85, both hemispheres 13.3
Hippocampus, CA2
nTPM: 13.6
2249 Male, age 74, both hemispheres 16.4
1940 Female, age 85, left hemisphere 15.3
2113 Female, age 91, right hemisphere 15.3
2437 Female, age 94, left hemisphere 13.1
1963 Male, age 80, left hemisphere 11.2
1892 Male, age 76, both hemispheres 10.1
Hippocampus, CA3
nTPM: 18.9
2620 Female, age 94, left hemisphere 27.0
2861 Female, age 67, both hemispheres 21.8
2436 Male, age 74, both hemispheres 21.1
1891 Female, age 85, both hemispheres 15.8
2137 Male, age 80, left hemisphere 14.0
1867 Male, age 76, both hemispheres 13.6
Parahippocampal cortex
nTPM: 16.5
2622 Female, age 67, right hemisphere 22.3
2018 Male, age 76, both hemispheres 18.5
2692 Male, age 74, both hemispheres 17.0
2693 Female, age 94, both hemispheres 16.6
1990 Female, age 91, right hemisphere 16.4
2245 Female, age 91, both hemispheres 16.2
1933 Female, age 85, both hemispheres 15.5
2532 Female, age 72, left hemisphere 15.0
1850 Male, age 80, both hemispheres 14.0
2250 Female, age 67, right hemisphere 13.0
Perirhinal gyrus
nTPM: 15.0
1794 Male, age 80, right hemisphere 17.9
2521 Female, age 94, right hemisphere 16.3
1841 Female, age 85, right hemisphere 15.4
2848 Male, age 76, right hemisphere 13.3
1847 Female, age 91, left hemisphere 12.3
Subiculum
nTPM: 16.7
2042 Male, age 76, both hemispheres 24.0
2619 Male, age 74, both hemispheres 19.1
2729 Female, age 91, right hemisphere 15.4
2438 Female, age 94, left hemisphere 14.6
1901 Male, age 80, both hemispheres 13.7
1977 Female, age 85, both hemispheres 13.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.5
Samples: 197

Max nTPM: 73.9
Min nTPM: 6.0
Std nTPM: 11.7
Median nTPM: 19.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 73.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 61.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 61.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 54.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 53.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 51.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 50.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 48.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 46.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 45.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 44.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 55.4
FF:10153-102I9 76 years, female 65.8
FF:10169-103B7 60 years, female 44.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 18.6
Samples: 4

Max nTPM: 25.4
Min nTPM: 14.2
Sample A Female 16.3
Sample B Female 18.3
Sample C Male 25.4
Sample D Male 14.2
Entorhinal cortex
nTPM: 24.3
Samples: 4

Max nTPM: 26.6
Min nTPM: 18.0
Sample A Female 26.0
Sample B Female 18.0
Sample C Male 26.6
Sample D Male 26.4
Subiculum
nTPM: 20.0
Samples: 4

Max nTPM: 26.3
Min nTPM: 16.7
Sample A Female 19.8
Sample B Female 17.1
Sample C Male 26.3
Sample D Male 16.7
Ventral hippocampus
nTPM: 21.2
Samples: 4

Max nTPM: 33.9
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 16.4
Sample C Male 33.9
Sample D Male 20.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 32.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.3
Samples: 4

Max nTPM: 46.5
Min nTPM: 25.3
Sample A Male 30.2
Sample B Male 46.5
Sample C Female 25.3
Sample D Female 27.1
Hippocampal formation
nTPM: 21.8
Samples: 4

Max nTPM: 23.4
Min nTPM: 20.0
Sample A Male 20.0
Sample B Male 22.5
Sample C Female 23.4
Sample D Female 21.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
791 Antisense, RP_040507_01_H06, Mouse strain C57BL/6J (56 days, male) 7.4
792 Antisense, RP_040507_01_H06, Mouse strain C57BL/6J (56 days, male) 3.0
71161141 Antisense, RP_050810_02_G05, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.