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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.1 nTPM
HPA:19.1 nTPM
GTEx:24.3 nTPM
FANTOM5:66.3 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:40.3 nTPM
Allen mouse:5.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.1
1781 Male, age 74, unknown 32.5
2289 Male, age 61, right hemisphere 21.0
2481 Female, age 94, left hemisphere 20.7
2846 Female, age 79, unknown 18.8
2290 Female, age 72, unknown 16.1
2288 Male, age 75, left hemisphere 15.7
1854 Male, age 80, left hemisphere 15.4
1857 Female, age 85, left hemisphere 12.7
Claustrum
nTPM: 18.7
2292 Female, age 85, both hemispheres 23.2
2196 Female, age 79, unknown 22.2
2568 Male, age 61, both hemispheres 20.7
2645 Female, age 72, unknown 19.2
2284 Female, age 91, both hemispheres 18.7
2198 Male, age 80, both hemispheres 18.0
1956 Male, age 74, unknown 15.9
2491 Male, age 75, both hemispheres 15.3
2392 Female, age 94, both hemispheres 15.0
Globus pallidus, externus
nTPM: 18.2
2646 Male, age 61, right hemisphere 24.4
2567 Female, age 72, unknown 18.9
1996 Male, age 80, right hemisphere 18.3
2772 Female, age 79, unknown 16.9
2395 Male, age 75, both hemispheres 12.3
Globus pallidus, internus
nTPM: 16.7
2778 Female, age 91, both hemispheres 20.4
2111 Female, age 85, right hemisphere 19.6
2566 Female, age 72, unknown 17.8
2037 Male, age 80, right hemisphere 17.1
1818 Male, age 74, unknown 16.4
2287 Male, age 75, right hemisphere 14.4
2483 Female, age 94, right hemisphere 11.1
Nucleus accumbens
nTPM: 16.3
1783 Male, age 74, unknown 20.9
2732 Male, age 80, right hemisphere 18.5
2824 Male, age 61, right hemisphere 17.7
2286 Male, age 75, left hemisphere 17.0
1806 Female, age 85, left hemisphere 16.6
2698 Female, age 72, unknown 15.4
1856 Female, age 91, right hemisphere 12.3
2391 Female, age 94, left hemisphere 11.9
Nucleus basalis of Meynert
nTPM: 18.9
2569 Male, age 61, both hemispheres 25.7
2484 Female, age 94, left hemisphere 21.5
2821 Male, age 75, both hemispheres 17.3
2393 Male, age 80, right hemisphere 11.2
Nucleus of the diagonal band
nTPM: 16.1
2029 Male, age 61, right hemisphere 18.0
1979 Male, age 74, unknown 16.7
1812 Female, age 91, both hemispheres 16.1
2195 Female, age 85, both hemispheres 15.9
2775 Male, age 80, right hemisphere 13.8
Olfactory tubercle
nTPM: 15.4
2487 Female, age 94, left hemisphere 16.8
2856 Male, age 75, right hemisphere 16.4
1998 Female, age 91, both hemispheres 14.8
1846 Male, age 80, right hemisphere 13.7
Putamen
nTPM: 16.6
2647 Male, age 75, left hemisphere 20.2
1838 Male, age 80, right hemisphere 18.1
2489 Female, age 72, unknown 17.8
1829 Male, age 74, unknown 17.0
2466 Female, age 79, unknown 16.8
2482 Female, age 94, left hemisphere 13.4
1937 Female, age 91, right hemisphere 12.9
Septal nuclei
nTPM: 15.6
2009 Female, age 91, both hemispheres 17.9
2629 Female, age 94, right hemisphere 17.3
2199 Male, age 80, right hemisphere 17.2
2059 Female, age 85, both hemispheres 15.9
1960 Male, age 74, unknown 14.6
2031 Female, age 72, unknown 13.3
2394 Male, age 61, left hemisphere 13.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.1
Samples: 246

Max nTPM: 70.6
Min nTPM: 6.5
Std nTPM: 10.5
Median nTPM: 22.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 70.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 67.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 65.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 63.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 62.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 60.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 55.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 53.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 49.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 49.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 47.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.3
Samples: 246

Max nTPM: 65.2
Min nTPM: 8.5
Std nTPM: 10.4
Median nTPM: 21.5
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 65.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 61.3
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 58.2
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 56.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 53.7
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 52.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 50.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 49.9
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 49.5
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 49.3
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 48.6
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Brain - Putamen (basal ganglia)
Average nTPM: 23.0
Samples: 205

Max nTPM: 67.7
Min nTPM: 6.2
Std nTPM: 10.0
Median nTPM: 21.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 67.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 61.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 61.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 57.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 45.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 45.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 43.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 43.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 43.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 42.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 42.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 54.3
FF:10164-103B2 76 years, female 54.3
Globus pallidus
Scaled Tags Per Million: 64.1
FF:10161-103A8 76 years, female 66.6
FF:10175-103C4 60 years, female 61.5
Nucleus accumbens
Scaled Tags Per Million: 66.3
FF:10037-101F1 23-56 years, mixed 66.3
Putamen
Scaled Tags Per Million: 49.3
FF:10176-103C5 60 years, female 49.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.8
Pig sample Sample description nTPM
Caudate
nTPM: 27.8
Samples: 4

Max nTPM: 33.1
Min nTPM: 19.4
Sample A Female 19.4
Sample B Female 29.0
Sample C Male 33.1
Sample D Male 29.8
Putamen
nTPM: 25.3
Samples: 4

Max nTPM: 38.4
Min nTPM: 16.7
Sample A Female 16.7
Sample B Female 22.5
Sample C Male 23.6
Sample D Male 38.4
Septum
nTPM: 18.7
Samples: 4

Max nTPM: 19.6
Min nTPM: 17.2
Sample A Female 17.2
Sample B Female 18.8
Sample C Male 19.6
Sample D Male 19.2
Ventral pallidum
nTPM: 23.7
Samples: 4

Max nTPM: 29.5
Min nTPM: 18.6
Sample A Female 19.7
Sample B Female 18.6
Sample C Male 27.0
Sample D Male 29.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.3
Samples: 4

Max nTPM: 50.7
Min nTPM: 27.8
Sample A Male 50.5
Sample B Male 50.7
Sample C Female 32.2
Sample D Female 27.8
Septum
nTPM: 21.8
Samples: 4

Max nTPM: 23.8
Min nTPM: 19.6
Sample A Male 23.8
Sample B Male 20.9
Sample C Female 22.7
Sample D Female 19.6
Ventral forebrain
nTPM: 32.3
Samples: 4

Max nTPM: 38.4
Min nTPM: 28.4
Sample A Male 38.4
Sample B Male 33.2
Sample C Female 29.3
Sample D Female 28.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.1
791 Antisense, RP_040507_01_H06, Mouse strain C57BL/6J (56 days, male) 9.7
792 Antisense, RP_040507_01_H06, Mouse strain C57BL/6J (56 days, male) 3.4
71161141 Antisense, RP_050810_02_G05, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 2.6
791 Antisense, RP_040507_01_H06, Mouse strain C57BL/6J (56 days, male) 5.0
792 Antisense, RP_040507_01_H06, Mouse strain C57BL/6J (56 days, male) 1.3
71161141 Antisense, RP_050810_02_G05, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.