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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.2 nTPM
HPA:43.2 nTPM
GTEx:65.0 nTPM
FANTOM5:61.6 Scaled Tags Per Million
Pig:35.0 nTPM
Mouse:50.6 nTPM
Allen mouse:4.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Hippocampus
nTPM: 43.2
2529 Female, age 94, left hemisphere 54.8
2621 Female, age 67, right hemisphere 53.4
1911 Female, age 85, right hemisphere 46.6
2148 Female, age 91, left hemisphere 41.9
1855 Male, age 76, left hemisphere 31.7
1898 Male, age 80, left hemisphere 30.8
Dentate gyrus
nTPM: 40.6
2530 Female, age 94, left hemisphere 59.6
2531 Female, age 67, both hemispheres 44.6
2010 Male, age 76, both hemispheres 36.9
2528 Male, age 74, both hemispheres 36.4
1927 Female, age 91, both hemispheres 34.0
2246 Female, age 85, both hemispheres 32.3
Entorhinal gyrus
nTPM: 37.5
2117 Female, age 91, right hemisphere 46.7
2764 Male, age 80, right hemisphere 40.7
2613 Female, age 94, left hemisphere 39.2
2686 Male, age 75, right hemisphere 37.2
1787 Male, age 76, left hemisphere 33.2
1938 Female, age 85, left hemisphere 28.3
Hippocampus, CA1
nTPM: 32.9
2527 Male, age 74, both hemispheres 40.4
1873 Female, age 85, both hemispheres 35.0
2749 Male, age 80, left hemisphere 34.6
2082 Female, age 91, right hemisphere 32.6
2045 Male, age 76, both hemispheres 21.8
Hippocampus, CA2
nTPM: 39.3
1963 Male, age 80, left hemisphere 59.2
2437 Female, age 94, left hemisphere 48.8
2113 Female, age 91, right hemisphere 35.3
2249 Male, age 74, both hemispheres 34.6
1940 Female, age 85, left hemisphere 30.0
1892 Male, age 76, both hemispheres 28.2
Hippocampus, CA3
nTPM: 34.7
2861 Female, age 67, both hemispheres 41.4
2620 Female, age 94, left hemisphere 40.3
2137 Male, age 80, left hemisphere 37.1
1891 Female, age 85, both hemispheres 34.0
1867 Male, age 76, both hemispheres 30.6
2436 Male, age 74, both hemispheres 25.0
Parahippocampal cortex
nTPM: 31.9
2532 Female, age 72, left hemisphere 41.0
2245 Female, age 91, both hemispheres 40.3
2692 Male, age 74, both hemispheres 38.7
2018 Male, age 76, both hemispheres 32.7
2622 Female, age 67, right hemisphere 31.7
1990 Female, age 91, right hemisphere 30.2
2693 Female, age 94, both hemispheres 27.5
1933 Female, age 85, both hemispheres 27.4
2250 Female, age 67, right hemisphere 26.8
1850 Male, age 80, both hemispheres 22.4
Perirhinal gyrus
nTPM: 24.4
2521 Female, age 94, right hemisphere 32.0
1794 Male, age 80, right hemisphere 25.4
1847 Female, age 91, left hemisphere 22.7
2848 Male, age 76, right hemisphere 22.2
1841 Female, age 85, right hemisphere 19.9
Subiculum
nTPM: 41.4
2042 Male, age 76, both hemispheres 56.1
1901 Male, age 80, both hemispheres 43.4
2619 Male, age 74, both hemispheres 41.5
2438 Female, age 94, left hemisphere 38.3
1977 Female, age 85, both hemispheres 35.9
2729 Female, age 91, right hemisphere 33.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 65.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 65.0
Samples: 197

Max nTPM: 133.5
Min nTPM: 12.3
Std nTPM: 19.5
Median nTPM: 61.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 133.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 126.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 118.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 117.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 115.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 114.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 111.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 110.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 103.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 103.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 97.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 61.6
FF:10153-102I9 76 years, female 73.0
FF:10169-103B7 60 years, female 50.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 32.1
Samples: 4

Max nTPM: 39.3
Min nTPM: 22.0
Sample A Female 37.7
Sample B Female 29.2
Sample C Male 39.3
Sample D Male 22.0
Entorhinal cortex
nTPM: 35.0
Samples: 4

Max nTPM: 42.7
Min nTPM: 31.9
Sample A Female 32.6
Sample B Female 31.9
Sample C Male 42.7
Sample D Male 32.9
Subiculum
nTPM: 33.9
Samples: 4

Max nTPM: 43.5
Min nTPM: 27.8
Sample A Female 43.5
Sample B Female 32.0
Sample C Male 32.3
Sample D Male 27.8
Ventral hippocampus
nTPM: 31.0
Samples: 4

Max nTPM: 40.0
Min nTPM: 22.9
Sample A Female 25.9
Sample B Female 22.9
Sample C Male 40.0
Sample D Male 35.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 50.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 40.9
Samples: 4

Max nTPM: 48.6
Min nTPM: 35.9
Sample A Male 48.6
Sample B Male 38.9
Sample C Female 40.3
Sample D Female 35.9
Hippocampal formation
nTPM: 50.6
Samples: 4

Max nTPM: 61.8
Min nTPM: 39.1
Sample A Male 39.1
Sample B Male 46.2
Sample C Female 61.8
Sample D Female 55.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.2
77799039 Antisense, RP_070212_03_D06, Mouse strain C57BL/6J (56 days, male) 6.8
70227932 Antisense, RP_050524_02_B08, Mouse strain C57BL/6J (56 days, male) 3.7
73635816 Antisense, RP_051101_03_C03, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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