ABOUTMENU
HELP
NEWS
PACS2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:101.5 nTPM
HPA:101.5 nTPM
GTEx:54.6 nTPM
FANTOM5:119.8 Scaled Tags Per Million
Pig:33.7 nTPM
Mouse:72.0 nTPM
Allen mouse:6.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 101.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.1
2288 Male, age 75, left hemisphere 46.8
2290 Female, age 72, unknown 37.5
2289 Male, age 61, right hemisphere 35.6
2846 Female, age 79, unknown 35.5
1781 Male, age 74, unknown 33.4
1854 Male, age 80, left hemisphere 31.1
2481 Female, age 94, left hemisphere 28.4
1857 Female, age 85, left hemisphere 24.4
Claustrum
nTPM: 52.6
2292 Female, age 85, both hemispheres 79.5
2645 Female, age 72, unknown 57.6
2568 Male, age 61, both hemispheres 56.8
1956 Male, age 74, unknown 52.8
2196 Female, age 79, unknown 48.1
2284 Female, age 91, both hemispheres 48.0
2491 Male, age 75, both hemispheres 47.8
2198 Male, age 80, both hemispheres 47.1
2392 Female, age 94, both hemispheres 35.4
Globus pallidus, externus
nTPM: 95.2
2567 Female, age 72, unknown 130.8
1996 Male, age 80, right hemisphere 98.7
2646 Male, age 61, right hemisphere 98.3
2772 Female, age 79, unknown 85.4
2395 Male, age 75, both hemispheres 62.7
Globus pallidus, internus
nTPM: 101.5
2111 Female, age 85, right hemisphere 164.9
2566 Female, age 72, unknown 122.8
2778 Female, age 91, both hemispheres 101.6
1818 Male, age 74, unknown 93.8
2287 Male, age 75, right hemisphere 91.0
2037 Male, age 80, right hemisphere 86.0
2483 Female, age 94, right hemisphere 50.2
Nucleus accumbens
nTPM: 37.8
2391 Female, age 94, left hemisphere 51.5
2732 Male, age 80, right hemisphere 44.9
2698 Female, age 72, unknown 42.5
2286 Male, age 75, left hemisphere 41.4
1783 Male, age 74, unknown 34.9
1806 Female, age 85, left hemisphere 33.6
2824 Male, age 61, right hemisphere 32.6
1856 Female, age 91, right hemisphere 20.6
Nucleus basalis of Meynert
nTPM: 52.6
2569 Male, age 61, both hemispheres 92.3
2821 Male, age 75, both hemispheres 45.4
2484 Female, age 94, left hemisphere 39.3
2393 Male, age 80, right hemisphere 33.2
Nucleus of the diagonal band
nTPM: 26.3
2029 Male, age 61, right hemisphere 29.0
2195 Female, age 85, both hemispheres 27.8
1812 Female, age 91, both hemispheres 26.9
1979 Male, age 74, unknown 26.9
2775 Male, age 80, right hemisphere 20.7
Olfactory tubercle
nTPM: 26.8
2487 Female, age 94, left hemisphere 33.6
2856 Male, age 75, right hemisphere 29.4
1998 Female, age 91, both hemispheres 23.8
1846 Male, age 80, right hemisphere 20.5
Putamen
nTPM: 47.0
2647 Male, age 75, left hemisphere 72.8
2489 Female, age 72, unknown 71.8
1829 Male, age 74, unknown 50.6
2482 Female, age 94, left hemisphere 40.9
2466 Female, age 79, unknown 37.6
1937 Female, age 91, right hemisphere 31.3
1838 Male, age 80, right hemisphere 24.2
Septal nuclei
nTPM: 31.8
2394 Male, age 61, left hemisphere 58.6
2059 Female, age 85, both hemispheres 38.0
2199 Male, age 80, right hemisphere 37.1
2629 Female, age 94, right hemisphere 26.0
1960 Male, age 74, unknown 22.6
2031 Female, age 72, unknown 20.4
2009 Female, age 91, both hemispheres 19.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 54.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 46.2
Samples: 246

Max nTPM: 87.0
Min nTPM: 20.4
Std nTPM: 9.1
Median nTPM: 45.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 87.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 81.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 69.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 68.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 66.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 65.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 64.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 62.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 62.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 62.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 61.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.5
Samples: 246

Max nTPM: 89.9
Min nTPM: 16.3
Std nTPM: 10.3
Median nTPM: 43.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 89.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 89.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 79.4
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 75.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 72.3
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 70.4
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 69.4
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 68.8
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 66.2
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 66.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 62.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 54.6
Samples: 205

Max nTPM: 154.2
Min nTPM: 24.6
Std nTPM: 13.3
Median nTPM: 52.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 154.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 94.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 91.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 89.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 81.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 76.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 76.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 75.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 73.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 72.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 72.5
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 50.2
FF:10164-103B2 76 years, female 50.2
Globus pallidus
Scaled Tags Per Million: 119.8
FF:10161-103A8 76 years, female 126.1
FF:10175-103C4 60 years, female 113.6
Nucleus accumbens
Scaled Tags Per Million: 60.1
FF:10037-101F1 23-56 years, mixed 60.1
Putamen
Scaled Tags Per Million: 52.1
FF:10176-103C5 60 years, female 52.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.7
Pig sample Sample description nTPM
Caudate
nTPM: 26.4
Samples: 4

Max nTPM: 31.3
Min nTPM: 21.5
Sample A Female 21.5
Sample B Female 27.5
Sample C Male 31.3
Sample D Male 25.1
Putamen
nTPM: 33.7
Samples: 4

Max nTPM: 41.8
Min nTPM: 24.5
Sample A Female 40.3
Sample B Female 24.5
Sample C Male 28.3
Sample D Male 41.8
Septum
nTPM: 27.2
Samples: 4

Max nTPM: 29.9
Min nTPM: 25.4
Sample A Female 27.4
Sample B Female 25.4
Sample C Male 29.9
Sample D Male 26.2
Ventral pallidum
nTPM: 33.7
Samples: 4

Max nTPM: 49.9
Min nTPM: 20.8
Sample A Female 20.8
Sample B Female 26.9
Sample C Male 49.9
Sample D Male 37.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 72.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 72.0
Samples: 4

Max nTPM: 73.2
Min nTPM: 70.6
Sample A Male 71.9
Sample B Male 70.6
Sample C Female 73.2
Sample D Female 72.3
Septum
nTPM: 56.4
Samples: 4

Max nTPM: 75.8
Min nTPM: 46.2
Sample A Male 47.6
Sample B Male 46.2
Sample C Female 56.0
Sample D Female 75.8
Ventral forebrain
nTPM: 48.9
Samples: 4

Max nTPM: 53.4
Min nTPM: 45.1
Sample A Male 51.5
Sample B Male 45.1
Sample C Female 45.6
Sample D Female 53.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.4
77799039 Antisense, RP_070212_03_D06, Mouse strain C57BL/6J (56 days, male) 7.8
70227932 Antisense, RP_050524_02_B08, Mouse strain C57BL/6J (56 days, male) 4.9
73635816 Antisense, RP_051101_03_C03, Mouse strain C57BL/6J (56 days, male) 3.5
Pallidum
Expression energy: 6.7
77799039 Antisense, RP_070212_03_D06, Mouse strain C57BL/6J (56 days, male) 10.1
70227932 Antisense, RP_050524_02_B08, Mouse strain C57BL/6J (56 days, male) 5.8
73635816 Antisense, RP_051101_03_C03, Mouse strain C57BL/6J (56 days, male) 4.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.