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VWA1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.7 nTPM
HPA:91.7 nTPM
GTEx:64.9 nTPM
FANTOM5:92.2 Scaled Tags Per Million
Pig:27.7 nTPM
Mouse:14.2 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 91.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.7
2288 Male, age 75, left hemisphere 57.9
2481 Female, age 94, left hemisphere 46.0
1781 Male, age 74, unknown 45.3
2290 Female, age 72, unknown 45.0
1854 Male, age 80, left hemisphere 43.8
2846 Female, age 79, unknown 41.6
1857 Female, age 85, left hemisphere 35.2
2289 Male, age 61, right hemisphere 35.0
Claustrum
nTPM: 59.8
2292 Female, age 85, both hemispheres 103.2
1956 Male, age 74, unknown 81.9
2198 Male, age 80, both hemispheres 57.8
2196 Female, age 79, unknown 54.3
2392 Female, age 94, both hemispheres 51.3
2284 Female, age 91, both hemispheres 50.2
2491 Male, age 75, both hemispheres 49.8
2568 Male, age 61, both hemispheres 45.2
2645 Female, age 72, unknown 44.1
Globus pallidus, externus
nTPM: 86.3
1996 Male, age 80, right hemisphere 111.7
2772 Female, age 79, unknown 88.7
2646 Male, age 61, right hemisphere 84.1
2567 Female, age 72, unknown 80.1
2395 Male, age 75, both hemispheres 66.9
Globus pallidus, internus
nTPM: 91.7
2111 Female, age 85, right hemisphere 138.5
2778 Female, age 91, both hemispheres 114.7
2566 Female, age 72, unknown 93.6
2037 Male, age 80, right hemisphere 90.0
1818 Male, age 74, unknown 80.2
2287 Male, age 75, right hemisphere 76.2
2483 Female, age 94, right hemisphere 48.8
Nucleus accumbens
nTPM: 50.1
2391 Female, age 94, left hemisphere 74.0
2732 Male, age 80, right hemisphere 65.0
2698 Female, age 72, unknown 58.4
2286 Male, age 75, left hemisphere 55.3
1783 Male, age 74, unknown 43.9
1806 Female, age 85, left hemisphere 42.6
2824 Male, age 61, right hemisphere 34.2
1856 Female, age 91, right hemisphere 27.3
Nucleus basalis of Meynert
nTPM: 54.8
2569 Male, age 61, both hemispheres 80.2
2821 Male, age 75, both hemispheres 49.7
2393 Male, age 80, right hemisphere 45.0
2484 Female, age 94, left hemisphere 44.1
Nucleus of the diagonal band
nTPM: 29.9
1979 Male, age 74, unknown 34.3
2029 Male, age 61, right hemisphere 30.8
1812 Female, age 91, both hemispheres 30.2
2195 Female, age 85, both hemispheres 27.2
2775 Male, age 80, right hemisphere 27.2
Olfactory tubercle
nTPM: 32.7
2856 Male, age 75, right hemisphere 35.0
1998 Female, age 91, both hemispheres 34.5
1846 Male, age 80, right hemisphere 32.0
2487 Female, age 94, left hemisphere 29.5
Putamen
nTPM: 45.8
2482 Female, age 94, left hemisphere 55.0
2489 Female, age 72, unknown 53.1
1829 Male, age 74, unknown 52.4
2647 Male, age 75, left hemisphere 49.4
1937 Female, age 91, right hemisphere 44.2
2466 Female, age 79, unknown 36.7
1838 Male, age 80, right hemisphere 29.7
Septal nuclei
nTPM: 38.8
2394 Male, age 61, left hemisphere 61.8
2059 Female, age 85, both hemispheres 45.0
2199 Male, age 80, right hemisphere 42.9
2629 Female, age 94, right hemisphere 33.3
2031 Female, age 72, unknown 31.5
2009 Female, age 91, both hemispheres 29.5
1960 Male, age 74, unknown 27.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 64.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.1
Samples: 246

Max nTPM: 120.4
Min nTPM: 5.8
Std nTPM: 20.2
Median nTPM: 46.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 120.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 102.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 100.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 96.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 95.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 95.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 95.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 92.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 92.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 90.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 89.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.0
Samples: 246

Max nTPM: 191.9
Min nTPM: 10.2
Std nTPM: 18.4
Median nTPM: 32.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 191.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 105.6
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 90.0
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 83.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 80.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 77.5
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 77.0
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 70.3
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 69.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 67.3
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 66.9
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Brain - Putamen (basal ganglia)
Average nTPM: 64.9
Samples: 205

Max nTPM: 264.0
Min nTPM: 15.1
Std nTPM: 28.1
Median nTPM: 59.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 264.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 200.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 151.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 129.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 121.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 119.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 115.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 115.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 113.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 111.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 111.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.4
FF:10164-103B2 76 years, female 41.4
Globus pallidus
Scaled Tags Per Million: 92.2
FF:10175-103C4 60 years, female 107.3
FF:10161-103A8 76 years, female 77.1
Nucleus accumbens
Scaled Tags Per Million: 48.3
FF:10037-101F1 23-56 years, mixed 48.3
Putamen
Scaled Tags Per Million: 26.3
FF:10176-103C5 60 years, female 26.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.7
Pig sample Sample description nTPM
Caudate
nTPM: 12.9
Samples: 4

Max nTPM: 15.1
Min nTPM: 11.9
Sample A Female 11.9
Sample B Female 15.1
Sample C Male 12.4
Sample D Male 12.0
Putamen
nTPM: 27.7
Samples: 4

Max nTPM: 44.1
Min nTPM: 15.5
Sample A Female 44.1
Sample B Female 15.5
Sample C Male 18.2
Sample D Male 33.1
Septum
nTPM: 17.6
Samples: 4

Max nTPM: 20.5
Min nTPM: 14.4
Sample A Female 20.5
Sample B Female 14.4
Sample C Male 16.0
Sample D Male 19.4
Ventral pallidum
nTPM: 24.5
Samples: 4

Max nTPM: 35.5
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 19.9
Sample C Male 30.7
Sample D Male 35.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 12.5
Sample A Male 12.8
Sample B Male 17.1
Sample C Female 12.5
Sample D Female 14.4
Septum
nTPM: 11.8
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.7
Sample A Male 13.0
Sample B Male 12.1
Sample C Female 11.5
Sample D Female 10.7
Ventral forebrain
nTPM: 14.2
Samples: 4

Max nTPM: 15.2
Min nTPM: 13.5
Sample A Male 13.6
Sample B Male 14.3
Sample C Female 15.2
Sample D Female 13.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
72007936 Antisense, RP_051017_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1
67792190 Antisense, RP_040920_01_C08, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
67792190 Antisense, RP_040920_01_C08, Mouse strain C57BL/6J (56 days, male) 0.2
72007936 Antisense, RP_051017_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.