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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.7 nTPM
HPA:39.7 nTPM
GTEx:27.5 nTPM
FANTOM5:15.9 Scaled Tags Per Million
Pig:13.7 nTPM
Mouse:21.3 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.0
2586 Male, age 75, left hemisphere 43.4
2828 Female, age 72, unknown 42.0
2666 Male, age 74, left hemisphere 40.4
1830 Male, age 51, unknown 38.3
2019 Male, age 18, unknown 38.2
2219 Male, age 76, both hemispheres 38.2
1827 Male, age 72, unknown 37.7
1833 Male, age 53, unknown 37.7
1870 Female, age 42, unknown 37.4
2411 Female, age 72, unknown 36.7
Dorsal raphe nucleus
nTPM: 36.6
2047 Male, age 72, unknown 37.9
1828 Male, age 53, unknown 37.5
2750 Male, age 76, both hemispheres 37.2
2298 Female, age 72, unknown 35.7
2016 Female, age 72, unknown 34.6
Inferior colliculus
nTPM: 36.4
2849 Male, age 72, unknown 38.1
1890 Male, age 53, unknown 36.6
1848 Female, age 42, unknown 36.1
2097 Female, age 72, unknown 35.0
Median raphe nucleus
nTPM: 39.7
2220 Male, age 76, midline 39.7
Pedunculopontine tegmental nucleus
nTPM: 37.9
2338 Male, age 61, both hemispheres 38.9
1921 Female, age 85, both hemispheres 37.7
2334 Male, age 80, both hemispheres 37.2
Periaquaductal grey, anterior
nTPM: 36.6
1795 Male, age 51, unknown 37.3
1947 Male, age 18, unknown 36.6
2502 Female, age 75, unknown 35.9
Periaquaductal grey, dorsal
nTPM: 36.6
2850 Male, age 76, both hemispheres 38.1
1831 Male, age 72, unknown 36.6
1840 Male, age 53, unknown 36.2
2464 Female, age 72, unknown 35.6
Periaquaductal grey, lateral
nTPM: 36.7
2140 Male, age 76, both hemispheres 37.6
2053 Male, age 18, unknown 37.4
2272 Male, age 74, both hemispheres 35.0
Pretectal area
nTPM: 38.1
1817 Female, age 42, unknown 40.8
2007 Male, age 72, unknown 40.3
1816 Male, age 51, unknown 39.8
1944 Female, age 72, unknown 39.5
2407 Male, age 75, both hemispheres 39.2
1815 Male, age 53, unknown 39.0
2667 Female, age 75, unknown 39.0
2825 Male, age 18, unknown 37.4
2273 Male, age 74, both hemispheres 34.8
2224 Female, age 72, unknown 34.7
2316 Male, age 76, right hemisphere 34.6
Red nucleus
nTPM: 38.9
2588 Male, age 74, left hemisphere 40.2
1821 Female, age 72, unknown 39.9
2584 Male, age 75, left hemisphere 39.8
2785 Male, age 18, unknown 39.4
2823 Male, age 76, right hemisphere 39.3
1954 Female, age 42, unknown 38.8
1904 Male, age 53, unknown 38.5
2503 Female, age 72, unknown 38.3
2769 Male, age 72, unknown 38.3
2227 Male, age 72, unknown 38.2
2725 Female, age 75, unknown 38.2
1865 Male, age 51, unknown 37.5
Substantia nigra
nTPM: 38.6
2665 Male, age 74, both hemispheres 40.5
2583 Male, age 75, right hemisphere 40.3
1851 Male, age 51, unknown 40.1
2699 Male, age 18, unknown 39.9
1916 Female, age 42, unknown 39.7
1941 Male, age 53, unknown 38.6
2590 Female, age 75, unknown 38.4
1889 Female, age 72, unknown 37.3
2409 Female, age 72, unknown 36.3
2241 Male, age 72, unknown 34.8
Superior colliculus
nTPM: 38.0
2664 Male, age 75, both hemispheres 41.2
1995 Male, age 72, unknown 38.9
2587 Male, age 74, left hemisphere 38.7
2668 Female, age 75, unknown 38.5
1913 Female, age 42, unknown 38.4
1796 Male, age 53, unknown 37.9
1895 Male, age 76, right hemisphere 37.0
1839 Male, age 51, unknown 36.6
2087 Female, age 72, unknown 36.6
2261 Male, age 18, unknown 36.5
Ventral tegmental area
nTPM: 38.0
2410 Female, age 72, unknown 39.1
2218 Male, age 76, both hemispheres 38.6
1915 Female, age 42, unknown 38.3
2021 Male, age 53, unknown 37.5
1942 Male, age 51, unknown 37.4
2223 Female, age 72, unknown 36.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.5
Samples: 139

Max nTPM: 47.9
Min nTPM: 11.7
Std nTPM: 5.6
Median nTPM: 27.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 47.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 40.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 40.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 39.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 39.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 37.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 37.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 36.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 36.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 36.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 36.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.9
FF:10158-103A5 76 years, female 15.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.7
Pig sample Sample description nTPM
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 17.5
Min nTPM: 11.3
Sample A Female 17.5
Sample B Female 11.3
Sample C Male 13.4
Sample D Male 12.6
Periaqueductal gray
nTPM: 10.9
Samples: 3

Max nTPM: 12.6
Min nTPM: 9.4
Sample B Female 9.4
Sample C Male 12.6
Sample D Male 10.7
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 14.6
Min nTPM: 10.3
Sample A Female 14.6
Sample B Female 10.3
Sample C Male 13.4
Sample D Male 11.2
Superior colliculi
nTPM: 13.2
Samples: 4

Max nTPM: 15.1
Min nTPM: 10.7
Sample A Female 15.1
Sample B Female 10.7
Sample C Male 13.7
Sample D Male 13.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.3
Samples: 4

Max nTPM: 22.8
Min nTPM: 19.6
Sample A Male 22.8
Sample B Male 20.2
Sample C Female 19.6
Sample D Female 22.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68193064 Antisense, RP_040914_01_B02, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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