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LACC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.5 nTPM
HPA:14.5 nTPM
GTEx:17.3 nTPM
FANTOM5:56.8 Scaled Tags Per Million
Mouse:3.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
2411 Female, age 72, unknown 15.0
1870 Female, age 42, unknown 14.7
2019 Male, age 18, unknown 14.0
1830 Male, age 51, unknown 13.6
1833 Male, age 53, unknown 13.4
1827 Male, age 72, unknown 12.0
2586 Male, age 75, left hemisphere 11.9
2666 Male, age 74, left hemisphere 11.0
2219 Male, age 76, both hemispheres 10.2
2828 Female, age 72, unknown 10.0
Dorsal raphe nucleus
nTPM: 9.7
2750 Male, age 76, both hemispheres 12.3
2016 Female, age 72, unknown 11.1
1828 Male, age 53, unknown 9.6
2047 Male, age 72, unknown 7.9
2298 Female, age 72, unknown 7.4
Inferior colliculus
nTPM: 10.5
2849 Male, age 72, unknown 11.0
1848 Female, age 42, unknown 10.8
1890 Male, age 53, unknown 10.4
2097 Female, age 72, unknown 9.9
Median raphe nucleus
nTPM: 8.3
2220 Male, age 76, midline 8.3
Pedunculopontine tegmental nucleus
nTPM: 14.1
2338 Male, age 61, both hemispheres 19.2
2334 Male, age 80, both hemispheres 12.7
1921 Female, age 85, both hemispheres 10.5
Periaquaductal grey, anterior
nTPM: 10.5
2502 Female, age 75, unknown 13.0
1947 Male, age 18, unknown 10.0
1795 Male, age 51, unknown 8.5
Periaquaductal grey, dorsal
nTPM: 10.0
2464 Female, age 72, unknown 12.6
1831 Male, age 72, unknown 11.2
1840 Male, age 53, unknown 8.3
2850 Male, age 76, both hemispheres 7.7
Periaquaductal grey, lateral
nTPM: 9.5
2053 Male, age 18, unknown 11.3
2272 Male, age 74, both hemispheres 10.2
2140 Male, age 76, both hemispheres 7.1
Pretectal area
nTPM: 11.8
1815 Male, age 53, unknown 14.9
1816 Male, age 51, unknown 14.8
2007 Male, age 72, unknown 14.0
2316 Male, age 76, right hemisphere 13.5
1817 Female, age 42, unknown 12.9
1944 Female, age 72, unknown 12.9
2407 Male, age 75, both hemispheres 11.6
2825 Male, age 18, unknown 10.1
2273 Male, age 74, both hemispheres 9.2
2224 Female, age 72, unknown 9.0
2667 Female, age 75, unknown 7.5
Red nucleus
nTPM: 14.5
2503 Female, age 72, unknown 17.7
1865 Male, age 51, unknown 16.5
1904 Male, age 53, unknown 16.5
2823 Male, age 76, right hemisphere 15.3
1954 Female, age 42, unknown 15.2
2588 Male, age 74, left hemisphere 14.7
2785 Male, age 18, unknown 14.7
2725 Female, age 75, unknown 14.0
1821 Female, age 72, unknown 13.5
2227 Male, age 72, unknown 12.3
2769 Male, age 72, unknown 12.3
2584 Male, age 75, left hemisphere 11.6
Substantia nigra
nTPM: 11.6
2590 Female, age 75, unknown 14.9
2409 Female, age 72, unknown 14.5
2583 Male, age 75, right hemisphere 13.6
1889 Female, age 72, unknown 12.4
2665 Male, age 74, both hemispheres 11.6
1851 Male, age 51, unknown 11.3
1941 Male, age 53, unknown 9.7
2699 Male, age 18, unknown 9.7
2241 Male, age 72, unknown 9.6
1916 Female, age 42, unknown 8.2
Superior colliculus
nTPM: 13.0
1995 Male, age 72, unknown 17.6
1913 Female, age 42, unknown 16.5
2587 Male, age 74, left hemisphere 13.0
2668 Female, age 75, unknown 12.8
1895 Male, age 76, right hemisphere 12.6
2087 Female, age 72, unknown 12.3
2261 Male, age 18, unknown 12.3
1796 Male, age 53, unknown 11.3
1839 Male, age 51, unknown 11.3
2664 Male, age 75, both hemispheres 10.1
Ventral tegmental area
nTPM: 10.7
2410 Female, age 72, unknown 14.7
1915 Female, age 42, unknown 10.8
2021 Male, age 53, unknown 10.4
2223 Female, age 72, unknown 9.7
2218 Male, age 76, both hemispheres 9.4
1942 Male, age 51, unknown 9.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.3
Samples: 139

Max nTPM: 77.4
Min nTPM: 3.4
Std nTPM: 13.7
Median nTPM: 13.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 77.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 75.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 72.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 64.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 60.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 50.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 44.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 38.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 35.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 35.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 35.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.8
FF:10158-103A5 76 years, female 56.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.6
Sample A Male 3.7
Sample B Male 2.9
Sample C Female 2.6
Sample D Female 3.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70946199 Antisense, RP_050419_01_D10, Mouse strain C57BL/6J (56 days, male) 0.1

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