ABOUTMENU
HELP
NEWS
MAF1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.6 nTPM
HPA:87.6 nTPM
GTEx:62.1 nTPM
FANTOM5:75.7 Scaled Tags Per Million
Mouse:54.2 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.4
2586 Male, age 75, left hemisphere 97.0
2828 Female, age 72, unknown 88.2
2666 Male, age 74, left hemisphere 86.2
1830 Male, age 51, unknown 85.6
1870 Female, age 42, unknown 85.1
1833 Male, age 53, unknown 85.0
2019 Male, age 18, unknown 84.5
1827 Male, age 72, unknown 84.2
2219 Male, age 76, both hemispheres 83.9
2411 Female, age 72, unknown 83.8
Dorsal raphe nucleus
nTPM: 81.3
1828 Male, age 53, unknown 83.0
2750 Male, age 76, both hemispheres 82.3
2016 Female, age 72, unknown 81.1
2298 Female, age 72, unknown 80.3
2047 Male, age 72, unknown 80.1
Inferior colliculus
nTPM: 83.0
2849 Male, age 72, unknown 87.0
1848 Female, age 42, unknown 83.8
1890 Male, age 53, unknown 81.2
2097 Female, age 72, unknown 79.9
Median raphe nucleus
nTPM: 78.0
2220 Male, age 76, midline 78.0
Pedunculopontine tegmental nucleus
nTPM: 82.3
2334 Male, age 80, both hemispheres 85.1
1921 Female, age 85, both hemispheres 81.4
2338 Male, age 61, both hemispheres 80.5
Periaquaductal grey, anterior
nTPM: 84.0
2502 Female, age 75, unknown 85.5
1795 Male, age 51, unknown 83.9
1947 Male, age 18, unknown 82.5
Periaquaductal grey, dorsal
nTPM: 81.4
2850 Male, age 76, both hemispheres 82.7
1840 Male, age 53, unknown 81.4
2464 Female, age 72, unknown 81.2
1831 Male, age 72, unknown 80.5
Periaquaductal grey, lateral
nTPM: 81.2
2140 Male, age 76, both hemispheres 83.8
2053 Male, age 18, unknown 81.8
2272 Male, age 74, both hemispheres 77.9
Pretectal area
nTPM: 83.2
1817 Female, age 42, unknown 86.1
2007 Male, age 72, unknown 86.0
2407 Male, age 75, both hemispheres 85.7
1815 Male, age 53, unknown 84.7
2825 Male, age 18, unknown 83.7
2316 Male, age 76, right hemisphere 83.6
1816 Male, age 51, unknown 83.1
1944 Female, age 72, unknown 81.9
2667 Female, age 75, unknown 81.7
2273 Male, age 74, both hemispheres 79.6
2224 Female, age 72, unknown 78.9
Red nucleus
nTPM: 87.6
2769 Male, age 72, unknown 90.7
2227 Male, age 72, unknown 90.1
2503 Female, age 72, unknown 90.1
2785 Male, age 18, unknown 90.0
2584 Male, age 75, left hemisphere 88.5
1865 Male, age 51, unknown 88.1
1904 Male, age 53, unknown 87.9
1821 Female, age 72, unknown 87.1
1954 Female, age 42, unknown 87.0
2588 Male, age 74, left hemisphere 85.9
2823 Male, age 76, right hemisphere 83.3
2725 Female, age 75, unknown 82.7
Substantia nigra
nTPM: 84.0
2583 Male, age 75, right hemisphere 90.1
2665 Male, age 74, both hemispheres 88.7
2590 Female, age 75, unknown 86.4
2699 Male, age 18, unknown 85.5
1851 Male, age 51, unknown 84.9
1889 Female, age 72, unknown 83.3
1941 Male, age 53, unknown 83.0
1916 Female, age 42, unknown 82.4
2409 Female, age 72, unknown 80.1
2241 Male, age 72, unknown 75.5
Superior colliculus
nTPM: 85.7
2664 Male, age 75, both hemispheres 92.6
1995 Male, age 72, unknown 87.8
2668 Female, age 75, unknown 87.7
1913 Female, age 42, unknown 87.5
1796 Male, age 53, unknown 86.3
1839 Male, age 51, unknown 85.6
2261 Male, age 18, unknown 83.2
2587 Male, age 74, left hemisphere 83.0
2087 Female, age 72, unknown 81.7
1895 Male, age 76, right hemisphere 81.1
Ventral tegmental area
nTPM: 83.2
2410 Female, age 72, unknown 85.7
2223 Female, age 72, unknown 85.2
1915 Female, age 42, unknown 83.4
2021 Male, age 53, unknown 82.4
1942 Male, age 51, unknown 82.0
2218 Male, age 76, both hemispheres 80.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.1
Samples: 139

Max nTPM: 99.8
Min nTPM: 30.9
Std nTPM: 12.0
Median nTPM: 61.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 99.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 98.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 95.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 88.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 87.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 84.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 83.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 82.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 81.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 81.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 79.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.7
FF:10158-103A5 76 years, female 75.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.2
Samples: 4

Max nTPM: 56.9
Min nTPM: 50.8
Sample A Male 56.9
Sample B Male 50.8
Sample C Female 54.1
Sample D Female 55.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
69080508 Antisense, RP_050324_02_B09, Mouse strain C57BL/6J (56 days, male) 6.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.