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CDH5
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:13.8 nTPM
HPA:13.8 nTPM
GTEx:11.3 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:8.2 nTPM
Allen mouse:0.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody CAB028366
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.8
Sample id Sample description nTPM
Hippocampus
nTPM: 13.0
2529 Female, age 94, left hemisphere 14.9
1911 Female, age 85, right hemisphere 13.2
2621 Female, age 67, right hemisphere 13.2
1855 Male, age 76, left hemisphere 12.5
2148 Female, age 91, left hemisphere 12.2
1898 Male, age 80, left hemisphere 12.0
Dentate gyrus
nTPM: 13.3
2530 Female, age 94, left hemisphere 19.5
2531 Female, age 67, both hemispheres 14.3
2528 Male, age 74, both hemispheres 11.8
2010 Male, age 76, both hemispheres 11.7
2246 Female, age 85, both hemispheres 11.4
1927 Female, age 91, both hemispheres 11.3
Entorhinal gyrus
nTPM: 11.4
2686 Male, age 75, right hemisphere 13.1
1787 Male, age 76, left hemisphere 12.9
2117 Female, age 91, right hemisphere 11.5
2613 Female, age 94, left hemisphere 10.7
2764 Male, age 80, right hemisphere 10.2
1938 Female, age 85, left hemisphere 9.9
Hippocampus, CA1
nTPM: 11.2
2527 Male, age 74, both hemispheres 13.1
1873 Female, age 85, both hemispheres 11.6
2045 Male, age 76, both hemispheres 11.2
2082 Female, age 91, right hemisphere 10.6
2749 Male, age 80, left hemisphere 9.7
Hippocampus, CA2
nTPM: 12.6
2437 Female, age 94, left hemisphere 16.5
1963 Male, age 80, left hemisphere 13.0
2113 Female, age 91, right hemisphere 11.9
2249 Male, age 74, both hemispheres 11.5
1892 Male, age 76, both hemispheres 11.3
1940 Female, age 85, left hemisphere 11.1
Hippocampus, CA3
nTPM: 13.8
2861 Female, age 67, both hemispheres 20.2
1867 Male, age 76, both hemispheres 13.3
2620 Female, age 94, left hemisphere 13.0
1891 Female, age 85, both hemispheres 12.8
2137 Male, age 80, left hemisphere 12.0
2436 Male, age 74, both hemispheres 11.4
Parahippocampal cortex
nTPM: 11.9
2018 Male, age 76, both hemispheres 15.9
2692 Male, age 74, both hemispheres 12.8
2622 Female, age 67, right hemisphere 12.7
1990 Female, age 91, right hemisphere 12.1
2532 Female, age 72, left hemisphere 11.7
2245 Female, age 91, both hemispheres 11.4
1850 Male, age 80, both hemispheres 11.2
2693 Female, age 94, both hemispheres 10.8
2250 Female, age 67, right hemisphere 10.2
1933 Female, age 85, both hemispheres 10.1
Perirhinal gyrus
nTPM: 11.1
1841 Female, age 85, right hemisphere 12.0
1794 Male, age 80, right hemisphere 11.4
2848 Male, age 76, right hemisphere 11.1
1847 Female, age 91, left hemisphere 10.6
2521 Female, age 94, right hemisphere 10.4
Subiculum
nTPM: 12.8
2042 Male, age 76, both hemispheres 14.8
2438 Female, age 94, left hemisphere 14.5
2619 Male, age 74, both hemispheres 13.4
1901 Male, age 80, both hemispheres 11.7
2729 Female, age 91, right hemisphere 11.7
1977 Female, age 85, both hemispheres 10.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.3
Samples: 197

Max nTPM: 41.5
Min nTPM: 1.1
Std nTPM: 7.4
Median nTPM: 9.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 41.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 40.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 38.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 37.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 37.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 33.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 32.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 31.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 28.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 28.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 26.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.2
FF:10169-103B7 60 years, female 31.3
FF:10153-102I9 76 years, female 23.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.4
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.4
Sample A Female 4.1
Sample B Female 4.4
Sample C Male 5.6
Sample D Male 3.4
Entorhinal cortex
nTPM: 7.3
Samples: 4

Max nTPM: 9.1
Min nTPM: 4.6
Sample A Female 9.1
Sample B Female 7.8
Sample C Male 7.7
Sample D Male 4.6
Subiculum
nTPM: 6.1
Samples: 4

Max nTPM: 8.8
Min nTPM: 3.3
Sample A Female 6.4
Sample B Female 3.3
Sample C Male 5.8
Sample D Male 8.8
Ventral hippocampus
nTPM: 5.5
Samples: 4

Max nTPM: 8.8
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 4.5
Sample C Male 8.8
Sample D Male 4.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.2
Samples: 4

Max nTPM: 8.7
Min nTPM: 7.2
Sample A Male 8.7
Sample B Male 7.2
Sample C Female 8.2
Sample D Female 8.6
Hippocampal formation
nTPM: 5.7
Samples: 4

Max nTPM: 6.8
Min nTPM: 4.5
Sample A Male 4.5
Sample B Male 5.9
Sample C Female 5.6
Sample D Female 6.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.9
77931975 Antisense, RP_070219_02_C05, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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