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SSC5D
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.6 nTPM
HPA:2.6 nTPM
GTEx:1.1 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:7.9 nTPM
Mouse:0.6 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.8
2828 Female, age 72, unknown 3.3
2666 Male, age 74, left hemisphere 2.8
2586 Male, age 75, left hemisphere 2.7
1827 Male, age 72, unknown 2.0
2019 Male, age 18, unknown 1.6
1870 Female, age 42, unknown 1.3
2219 Male, age 76, both hemispheres 1.3
1830 Male, age 51, unknown 1.1
1833 Male, age 53, unknown 1.0
2411 Female, age 72, unknown 0.5
Dorsal raphe nucleus
nTPM: 1.9
2016 Female, age 72, unknown 2.6
1828 Male, age 53, unknown 2.2
2298 Female, age 72, unknown 1.9
2047 Male, age 72, unknown 1.7
2750 Male, age 76, both hemispheres 1.1
Inferior colliculus
nTPM: 1.5
2849 Male, age 72, unknown 2.0
1848 Female, age 42, unknown 1.9
2097 Female, age 72, unknown 1.2
1890 Male, age 53, unknown 0.9
Median raphe nucleus
nTPM: 1.2
2220 Male, age 76, midline 1.2
Pedunculopontine tegmental nucleus
nTPM: 1.0
2338 Male, age 61, both hemispheres 1.7
1921 Female, age 85, both hemispheres 0.8
2334 Male, age 80, both hemispheres 0.5
Periaquaductal grey, anterior
nTPM: 2.5
1947 Male, age 18, unknown 3.2
1795 Male, age 51, unknown 2.2
2502 Female, age 75, unknown 2.1
Periaquaductal grey, dorsal
nTPM: 2.3
1831 Male, age 72, unknown 2.6
2850 Male, age 76, both hemispheres 2.5
1840 Male, age 53, unknown 2.1
2464 Female, age 72, unknown 1.8
Periaquaductal grey, lateral
nTPM: 2.5
2272 Male, age 74, both hemispheres 3.3
2140 Male, age 76, both hemispheres 2.6
2053 Male, age 18, unknown 1.7
Pretectal area
nTPM: 1.7
2273 Male, age 74, both hemispheres 2.6
2316 Male, age 76, right hemisphere 2.5
2667 Female, age 75, unknown 2.4
2825 Male, age 18, unknown 2.1
1944 Female, age 72, unknown 1.7
2224 Female, age 72, unknown 1.6
1816 Male, age 51, unknown 1.5
2407 Male, age 75, both hemispheres 1.5
1815 Male, age 53, unknown 1.3
1817 Female, age 42, unknown 1.0
2007 Male, age 72, unknown 1.0
Red nucleus
nTPM: 2.6
1954 Female, age 42, unknown 7.3
1865 Male, age 51, unknown 4.4
1904 Male, age 53, unknown 3.0
2584 Male, age 75, left hemisphere 2.3
2588 Male, age 74, left hemisphere 2.2
2769 Male, age 72, unknown 2.2
2823 Male, age 76, right hemisphere 2.0
1821 Female, age 72, unknown 1.7
2785 Male, age 18, unknown 1.7
2227 Male, age 72, unknown 1.6
2725 Female, age 75, unknown 1.6
2503 Female, age 72, unknown 1.5
Substantia nigra
nTPM: 1.7
1941 Male, age 53, unknown 2.6
2241 Male, age 72, unknown 2.3
2590 Female, age 75, unknown 2.1
2665 Male, age 74, both hemispheres 2.0
1916 Female, age 42, unknown 1.9
2583 Male, age 75, right hemisphere 1.7
2699 Male, age 18, unknown 1.7
1851 Male, age 51, unknown 1.6
1889 Female, age 72, unknown 1.0
2409 Female, age 72, unknown 0.6
Superior colliculus
nTPM: 1.8
2664 Male, age 75, both hemispheres 3.6
2261 Male, age 18, unknown 2.2
1995 Male, age 72, unknown 1.9
2668 Female, age 75, unknown 1.7
1796 Male, age 53, unknown 1.5
1913 Female, age 42, unknown 1.5
2087 Female, age 72, unknown 1.5
1839 Male, age 51, unknown 1.4
1895 Male, age 76, right hemisphere 1.2
2587 Male, age 74, left hemisphere 1.1
Ventral tegmental area
nTPM: 1.6
2021 Male, age 53, unknown 2.2
1942 Male, age 51, unknown 1.8
1915 Female, age 42, unknown 1.6
2223 Female, age 72, unknown 1.4
2410 Female, age 72, unknown 1.3
2218 Male, age 76, both hemispheres 1.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.1
Samples: 139

Max nTPM: 3.0
Min nTPM: 0.1
Std nTPM: 0.5
Median nTPM: 1.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 3.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 3.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 3.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 2.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 2.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 2.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 2.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 2.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.9
Pig sample Sample description nTPM
Midbrain
nTPM: 4.3
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.6
Sample A Female 4.4
Sample B Female 3.6
Sample C Male 4.8
Sample D Male 4.3
Periaqueductal gray
nTPM: 3.9
Samples: 3

Max nTPM: 4.7
Min nTPM: 3.5
Sample B Female 3.5
Sample C Male 3.6
Sample D Male 4.7
Substantia nigra
nTPM: 4.9
Samples: 4

Max nTPM: 7.3
Min nTPM: 2.9
Sample A Female 2.9
Sample B Female 7.3
Sample C Male 3.9
Sample D Male 5.5
Superior colliculi
nTPM: 7.9
Samples: 4

Max nTPM: 12.8
Min nTPM: 5.6
Sample A Female 7.5
Sample B Female 12.8
Sample C Male 5.6
Sample D Male 5.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.4
Sample A Male 0.8
Sample B Male 0.5
Sample C Female 0.5
Sample D Female 0.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
70305281 Antisense, RP_050609_03_F12, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.