ABOUTMENU
HELP
NEWS
LYNX1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.6 nTPM
HPA:79.6 nTPM
GTEx:103.7 nTPM
FANTOM5:380.7 Scaled Tags Per Million
Pig:74.2 nTPM
Mouse:252.3 nTPM
Allen mouse:10.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 79.6
Sample id Sample description nTPM
Hippocampus
nTPM: 72.2
2621 Female, age 67, right hemisphere 170.4
1855 Male, age 76, left hemisphere 105.4
1898 Male, age 80, left hemisphere 94.3
2148 Female, age 91, left hemisphere 45.0
1911 Female, age 85, right hemisphere 13.2
2529 Female, age 94, left hemisphere 5.0
Dentate gyrus
nTPM: 79.6
2530 Female, age 94, left hemisphere 193.7
2010 Male, age 76, both hemispheres 112.1
1927 Female, age 91, both hemispheres 75.4
2246 Female, age 85, both hemispheres 49.5
2528 Male, age 74, both hemispheres 30.7
2531 Female, age 67, both hemispheres 15.9
Entorhinal gyrus
nTPM: 24.3
2613 Female, age 94, left hemisphere 72.1
2764 Male, age 80, right hemisphere 30.3
1938 Female, age 85, left hemisphere 19.6
1787 Male, age 76, left hemisphere 12.8
2686 Male, age 75, right hemisphere 11.2
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 77.3
2749 Male, age 80, left hemisphere 185.9
1873 Female, age 85, both hemispheres 126.2
2527 Male, age 74, both hemispheres 54.8
2045 Male, age 76, both hemispheres 19.7
2082 Female, age 91, right hemisphere 0.0
Hippocampus, CA2
nTPM: 65.7
1963 Male, age 80, left hemisphere 159.5
1892 Male, age 76, both hemispheres 122.4
2437 Female, age 94, left hemisphere 91.8
2249 Male, age 74, both hemispheres 20.5
1940 Female, age 85, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
Hippocampus, CA3
nTPM: 41.2
2861 Female, age 67, both hemispheres 127.5
2137 Male, age 80, left hemisphere 48.0
1867 Male, age 76, both hemispheres 25.1
2620 Female, age 94, left hemisphere 23.2
2436 Male, age 74, both hemispheres 22.1
1891 Female, age 85, both hemispheres 1.5
Parahippocampal cortex
nTPM: 26.8
2622 Female, age 67, right hemisphere 91.0
2245 Female, age 91, both hemispheres 59.4
2532 Female, age 72, left hemisphere 27.9
2692 Male, age 74, both hemispheres 21.6
2250 Female, age 67, right hemisphere 20.8
1850 Male, age 80, both hemispheres 20.7
1933 Female, age 85, both hemispheres 13.6
2693 Female, age 94, both hemispheres 7.0
1990 Female, age 91, right hemisphere 5.6
2018 Male, age 76, both hemispheres 0.0
Perirhinal gyrus
nTPM: 18.9
1847 Female, age 91, left hemisphere 32.9
1794 Male, age 80, right hemisphere 25.5
1841 Female, age 85, right hemisphere 19.2
2521 Female, age 94, right hemisphere 17.1
2848 Male, age 76, right hemisphere 0.0
Subiculum
nTPM: 13.5
2438 Female, age 94, left hemisphere 62.1
2619 Male, age 74, both hemispheres 12.4
1901 Male, age 80, both hemispheres 6.9
1977 Female, age 85, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 103.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 103.7
Samples: 197

Max nTPM: 354.9
Min nTPM: 5.3
Std nTPM: 65.4
Median nTPM: 85.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 354.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 339.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 311.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 297.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 295.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 281.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 261.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 260.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 253.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 249.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 245.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 380.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 380.7
FF:10169-103B7 60 years, female 558.7
FF:10153-102I9 76 years, female 202.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 74.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 63.3
Samples: 4

Max nTPM: 90.9
Min nTPM: 39.9
Sample A Female 90.9
Sample B Female 74.0
Sample C Male 48.3
Sample D Male 39.9
Entorhinal cortex
nTPM: 74.2
Samples: 4

Max nTPM: 79.3
Min nTPM: 67.0
Sample A Female 79.3
Sample B Female 78.4
Sample C Male 72.0
Sample D Male 67.0
Subiculum
nTPM: 53.1
Samples: 4

Max nTPM: 72.9
Min nTPM: 42.9
Sample A Female 72.9
Sample B Female 47.6
Sample C Male 42.9
Sample D Male 49.1
Ventral hippocampus
nTPM: 61.0
Samples: 4

Max nTPM: 70.1
Min nTPM: 36.6
Sample A Female 70.1
Sample B Female 36.6
Sample C Male 69.1
Sample D Male 68.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 252.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 182.3
Samples: 4

Max nTPM: 201.8
Min nTPM: 158.7
Sample A Male 201.8
Sample B Male 178.5
Sample C Female 190.1
Sample D Female 158.7
Hippocampal formation
nTPM: 252.4
Samples: 4

Max nTPM: 319.7
Min nTPM: 203.4
Sample A Male 203.4
Sample B Male 245.5
Sample C Female 319.7
Sample D Female 240.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.4
656 Antisense, RP_Baylor_103140, Mouse strain C57BL/6J (56 days, male) 10.4
655 Antisense, RP_Baylor_103140, Mouse strain C57BL/6J (56 days, male) 8.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.