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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.4 nTPM
HPA:13.4 nTPM
GTEx:9.7 nTPM
FANTOM5:46.5 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:16.1 nTPM
Allen mouse:2.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.6
2288 Male, age 75, left hemisphere 12.8
1781 Male, age 74, unknown 11.1
2481 Female, age 94, left hemisphere 11.0
2846 Female, age 79, unknown 10.7
1854 Male, age 80, left hemisphere 10.2
1857 Female, age 85, left hemisphere 9.6
2290 Female, age 72, unknown 9.6
2289 Male, age 61, right hemisphere 9.4
Claustrum
nTPM: 12.2
1956 Male, age 74, unknown 14.0
2292 Female, age 85, both hemispheres 13.6
2196 Female, age 79, unknown 12.5
2392 Female, age 94, both hemispheres 12.5
2284 Female, age 91, both hemispheres 11.8
2568 Male, age 61, both hemispheres 11.7
2198 Male, age 80, both hemispheres 11.5
2491 Male, age 75, both hemispheres 11.1
2645 Female, age 72, unknown 11.0
Globus pallidus, externus
nTPM: 12.2
2567 Female, age 72, unknown 14.0
2395 Male, age 75, both hemispheres 12.1
2772 Female, age 79, unknown 12.1
1996 Male, age 80, right hemisphere 11.9
2646 Male, age 61, right hemisphere 10.7
Globus pallidus, internus
nTPM: 13.4
2111 Female, age 85, right hemisphere 14.9
2566 Female, age 72, unknown 14.7
2778 Female, age 91, both hemispheres 13.8
2287 Male, age 75, right hemisphere 13.6
1818 Male, age 74, unknown 13.4
2037 Male, age 80, right hemisphere 12.5
2483 Female, age 94, right hemisphere 10.7
Nucleus accumbens
nTPM: 11.0
2391 Female, age 94, left hemisphere 13.4
2698 Female, age 72, unknown 12.7
2286 Male, age 75, left hemisphere 12.0
2732 Male, age 80, right hemisphere 10.6
1783 Male, age 74, unknown 10.1
1806 Female, age 85, left hemisphere 10.0
2824 Male, age 61, right hemisphere 9.8
1856 Female, age 91, right hemisphere 9.6
Nucleus basalis of Meynert
nTPM: 10.9
2821 Male, age 75, both hemispheres 12.3
2484 Female, age 94, left hemisphere 10.7
2393 Male, age 80, right hemisphere 10.3
2569 Male, age 61, both hemispheres 10.2
Nucleus of the diagonal band
nTPM: 11.5
2195 Female, age 85, both hemispheres 12.2
2775 Male, age 80, right hemisphere 11.4
1812 Female, age 91, both hemispheres 11.3
2029 Male, age 61, right hemisphere 11.3
1979 Male, age 74, unknown 11.2
Olfactory tubercle
nTPM: 11.5
2856 Male, age 75, right hemisphere 11.9
2487 Female, age 94, left hemisphere 11.8
1846 Male, age 80, right hemisphere 11.4
1998 Female, age 91, both hemispheres 11.0
Putamen
nTPM: 10.6
2482 Female, age 94, left hemisphere 11.5
2647 Male, age 75, left hemisphere 11.1
1829 Male, age 74, unknown 11.0
1838 Male, age 80, right hemisphere 10.6
1937 Female, age 91, right hemisphere 10.6
2489 Female, age 72, unknown 10.2
2466 Female, age 79, unknown 9.1
Septal nuclei
nTPM: 11.3
2629 Female, age 94, right hemisphere 13.7
2009 Female, age 91, both hemispheres 11.6
2199 Male, age 80, right hemisphere 11.3
2394 Male, age 61, left hemisphere 11.3
1960 Male, age 74, unknown 10.6
2059 Female, age 85, both hemispheres 10.6
2031 Female, age 72, unknown 10.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.6
Samples: 246

Max nTPM: 15.9
Min nTPM: 4.7
Std nTPM: 1.6
Median nTPM: 9.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 15.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 15.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 13.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 13.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 13.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 12.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 12.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 12.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 12.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 12.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 12.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.6
Samples: 246

Max nTPM: 15.6
Min nTPM: 5.4
Std nTPM: 1.6
Median nTPM: 9.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 15.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 15.1
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 15.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 14.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 14.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 13.9
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 13.7
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 12.7
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 12.7
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 12.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 12.3
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Brain - Putamen (basal ganglia)
Average nTPM: 9.7
Samples: 205

Max nTPM: 15.9
Min nTPM: 5.0
Std nTPM: 1.7
Median nTPM: 9.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 15.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 15.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 14.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 14.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 14.2
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 12.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 12.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 12.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 12.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 12.4
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 12.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.7
FF:10164-103B2 76 years, female 27.7
Globus pallidus
Scaled Tags Per Million: 39.0
FF:10175-103C4 60 years, female 40.2
FF:10161-103A8 76 years, female 37.7
Nucleus accumbens
Scaled Tags Per Million: 46.5
FF:10037-101F1 23-56 years, mixed 46.5
Putamen
Scaled Tags Per Million: 30.3
FF:10176-103C5 60 years, female 30.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.6
Pig sample Sample description nTPM
Caudate
nTPM: 11.2
Samples: 4

Max nTPM: 11.8
Min nTPM: 10.7
Sample A Female 11.1
Sample B Female 11.1
Sample C Male 11.8
Sample D Male 10.7
Putamen
nTPM: 11.6
Samples: 4

Max nTPM: 14.3
Min nTPM: 10.1
Sample A Female 10.1
Sample B Female 10.7
Sample C Male 14.3
Sample D Male 11.4
Septum
nTPM: 11.0
Samples: 4

Max nTPM: 11.5
Min nTPM: 10.4
Sample A Female 11.1
Sample B Female 10.8
Sample C Male 11.5
Sample D Male 10.4
Ventral pallidum
nTPM: 11.2
Samples: 4

Max nTPM: 11.9
Min nTPM: 10.5
Sample A Female 11.9
Sample B Female 10.5
Sample C Male 11.6
Sample D Male 10.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.3
Samples: 4

Max nTPM: 15.6
Min nTPM: 13.3
Sample A Male 13.7
Sample B Male 13.3
Sample C Female 14.6
Sample D Female 15.6
Septum
nTPM: 16.1
Samples: 4

Max nTPM: 17.6
Min nTPM: 14.4
Sample A Male 14.4
Sample B Male 17.6
Sample C Female 15.1
Sample D Female 17.2
Ventral forebrain
nTPM: 15.4
Samples: 4

Max nTPM: 17.0
Min nTPM: 14.2
Sample A Male 14.2
Sample B Male 15.5
Sample C Female 17.0
Sample D Female 14.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.1
74578377 Antisense, RP_060215_01_B12, Mouse strain C57BL/6J (56 days, male) 4.2
73927790 Antisense, RP_051219_01_G08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 1.6
74578377 Antisense, RP_060215_01_B12, Mouse strain C57BL/6J (56 days, male) 3.2
73927790 Antisense, RP_051219_01_G08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.