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KCTD4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.6 nTPM
HPA:24.6 nTPM
GTEx:52.6 nTPM
FANTOM5:150.5 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:9.8 nTPM
Allen mouse:1.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA040734
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.6
1857 Female, age 85, left hemisphere 25.7
1854 Male, age 80, left hemisphere 22.6
2290 Female, age 72, unknown 18.0
1781 Male, age 74, unknown 16.6
2288 Male, age 75, left hemisphere 15.6
2846 Female, age 79, unknown 12.7
2289 Male, age 61, right hemisphere 11.9
2481 Female, age 94, left hemisphere 10.2
Claustrum
nTPM: 12.1
2196 Female, age 79, unknown 16.8
1956 Male, age 74, unknown 14.0
2392 Female, age 94, both hemispheres 12.7
2491 Male, age 75, both hemispheres 11.9
2568 Male, age 61, both hemispheres 11.0
2198 Male, age 80, both hemispheres 10.9
2292 Female, age 85, both hemispheres 10.9
2284 Female, age 91, both hemispheres 10.4
2645 Female, age 72, unknown 10.3
Globus pallidus, externus
nTPM: 11.4
2772 Female, age 79, unknown 12.4
2395 Male, age 75, both hemispheres 11.9
1996 Male, age 80, right hemisphere 11.6
2567 Female, age 72, unknown 11.1
2646 Male, age 61, right hemisphere 9.9
Globus pallidus, internus
nTPM: 12.2
2287 Male, age 75, right hemisphere 14.6
2111 Female, age 85, right hemisphere 12.7
1818 Male, age 74, unknown 12.4
2566 Female, age 72, unknown 12.1
2778 Female, age 91, both hemispheres 11.9
2037 Male, age 80, right hemisphere 11.4
2483 Female, age 94, right hemisphere 9.9
Nucleus accumbens
nTPM: 24.6
1856 Female, age 91, right hemisphere 36.1
1783 Male, age 74, unknown 30.5
1806 Female, age 85, left hemisphere 29.5
2824 Male, age 61, right hemisphere 28.3
2698 Female, age 72, unknown 25.4
2286 Male, age 75, left hemisphere 17.2
2391 Female, age 94, left hemisphere 15.3
2732 Male, age 80, right hemisphere 14.3
Nucleus basalis of Meynert
nTPM: 10.5
2821 Male, age 75, both hemispheres 11.9
2393 Male, age 80, right hemisphere 10.3
2484 Female, age 94, left hemisphere 10.2
2569 Male, age 61, both hemispheres 9.7
Nucleus of the diagonal band
nTPM: 12.9
2195 Female, age 85, both hemispheres 14.6
1812 Female, age 91, both hemispheres 14.2
2775 Male, age 80, right hemisphere 13.1
2029 Male, age 61, right hemisphere 12.5
1979 Male, age 74, unknown 10.0
Olfactory tubercle
nTPM: 12.4
1846 Male, age 80, right hemisphere 15.6
2487 Female, age 94, left hemisphere 12.2
2856 Male, age 75, right hemisphere 11.0
1998 Female, age 91, both hemispheres 10.9
Putamen
nTPM: 14.3
1937 Female, age 91, right hemisphere 22.5
1838 Male, age 80, right hemisphere 22.1
2482 Female, age 94, left hemisphere 12.4
1829 Male, age 74, unknown 11.2
2647 Male, age 75, left hemisphere 11.2
2466 Female, age 79, unknown 10.4
2489 Female, age 72, unknown 10.0
Septal nuclei
nTPM: 12.7
1960 Male, age 74, unknown 16.9
2629 Female, age 94, right hemisphere 13.3
2031 Female, age 72, unknown 12.8
2009 Female, age 91, both hemispheres 12.7
2394 Male, age 61, left hemisphere 12.0
2059 Female, age 85, both hemispheres 11.9
2199 Male, age 80, right hemisphere 9.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.4
Samples: 246

Max nTPM: 90.4
Min nTPM: 2.5
Std nTPM: 14.3
Median nTPM: 17.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 90.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 85.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 73.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 64.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 62.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 61.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 61.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 59.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 58.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 58.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 58.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 52.6
Samples: 246

Max nTPM: 120.2
Min nTPM: 1.1
Std nTPM: 29.3
Median nTPM: 54.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 120.2
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 116.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 115.6
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 114.0
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 113.8
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 113.5
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 111.9
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 109.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 107.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 106.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 104.6
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Brain - Putamen (basal ganglia)
Average nTPM: 14.3
Samples: 205

Max nTPM: 73.5
Min nTPM: 2.7
Std nTPM: 10.6
Median nTPM: 11.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 73.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 62.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 55.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 55.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 49.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 48.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 45.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 39.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 37.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 34.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 34.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 150.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 150.5
FF:10164-103B2 76 years, female 150.5
Globus pallidus
Scaled Tags Per Million: 14.7
FF:10161-103A8 76 years, female 18.4
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 24.3
FF:10037-101F1 23-56 years, mixed 24.3
Putamen
Scaled Tags Per Million: 146.2
FF:10176-103C5 60 years, female 146.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.2
Pig sample Sample description nTPM
Caudate
nTPM: 10.2
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.1
Sample A Female 10.8
Sample B Female 11.5
Sample C Male 9.1
Sample D Male 9.4
Putamen
nTPM: 5.8
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.4
Sample A Female 5.8
Sample B Female 6.0
Sample C Male 5.4
Sample D Male 6.0
Septum
nTPM: 9.7
Samples: 4

Max nTPM: 15.0
Min nTPM: 7.6
Sample A Female 15.0
Sample B Female 8.4
Sample C Male 7.9
Sample D Male 7.6
Ventral pallidum
nTPM: 9.0
Samples: 4

Max nTPM: 15.2
Min nTPM: 5.4
Sample A Female 15.2
Sample B Female 5.7
Sample C Male 5.4
Sample D Male 9.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.9
Samples: 4

Max nTPM: 7.1
Min nTPM: 6.5
Sample A Male 6.8
Sample B Male 6.5
Sample C Female 7.1
Sample D Female 7.1
Septum
nTPM: 9.8
Samples: 4

Max nTPM: 10.7
Min nTPM: 8.6
Sample A Male 8.6
Sample B Male 10.0
Sample C Female 9.9
Sample D Female 10.7
Ventral forebrain
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.7
Sample A Male 6.1
Sample B Male 5.8
Sample C Female 4.7
Sample D Female 6.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
68744486 Antisense, RP_050208_01_A05, Mouse strain C57BL/6J (56 days, male) 2.1
71063818 Antisense, RP_050725_03_C05, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 1.3
68744486 Antisense, RP_050208_01_A05, Mouse strain C57BL/6J (56 days, male) 2.3
71063818 Antisense, RP_050725_03_C05, Mouse strain C57BL/6J (56 days, male) 0.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.