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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.2 nTPM
HPA:52.2 nTPM
GTEx:56.7 nTPM
FANTOM5:79.8 Scaled Tags Per Million
Pig:38.2 nTPM
Mouse:74.5 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.1
2019 Male, age 18, unknown 52.6
1870 Female, age 42, unknown 51.6
2411 Female, age 72, unknown 51.0
1827 Male, age 72, unknown 50.7
1833 Male, age 53, unknown 50.6
2666 Male, age 74, left hemisphere 50.1
1830 Male, age 51, unknown 49.9
2219 Male, age 76, both hemispheres 49.7
2586 Male, age 75, left hemisphere 48.2
2828 Female, age 72, unknown 47.0
Dorsal raphe nucleus
nTPM: 49.1
2298 Female, age 72, unknown 50.7
2750 Male, age 76, both hemispheres 50.1
1828 Male, age 53, unknown 49.8
2016 Female, age 72, unknown 48.2
2047 Male, age 72, unknown 47.0
Inferior colliculus
nTPM: 51.4
2097 Female, age 72, unknown 53.9
1890 Male, age 53, unknown 51.3
1848 Female, age 42, unknown 50.3
2849 Male, age 72, unknown 50.1
Median raphe nucleus
nTPM: 51.6
2220 Male, age 76, midline 51.6
Pedunculopontine tegmental nucleus
nTPM: 51.4
2334 Male, age 80, both hemispheres 53.5
2338 Male, age 61, both hemispheres 50.6
1921 Female, age 85, both hemispheres 50.2
Periaquaductal grey, anterior
nTPM: 50.3
1947 Male, age 18, unknown 51.0
2502 Female, age 75, unknown 50.2
1795 Male, age 51, unknown 49.8
Periaquaductal grey, dorsal
nTPM: 50.2
2850 Male, age 76, both hemispheres 52.1
1831 Male, age 72, unknown 50.8
2464 Female, age 72, unknown 49.3
1840 Male, age 53, unknown 48.5
Periaquaductal grey, lateral
nTPM: 48.8
2272 Male, age 74, both hemispheres 49.8
2053 Male, age 18, unknown 48.9
2140 Male, age 76, both hemispheres 47.9
Pretectal area
nTPM: 52.2
1817 Female, age 42, unknown 56.6
2007 Male, age 72, unknown 55.6
1944 Female, age 72, unknown 55.0
1815 Male, age 53, unknown 54.5
1816 Male, age 51, unknown 54.3
2667 Female, age 75, unknown 50.9
2273 Male, age 74, both hemispheres 50.5
2224 Female, age 72, unknown 50.4
2407 Male, age 75, both hemispheres 49.8
2825 Male, age 18, unknown 48.8
2316 Male, age 76, right hemisphere 47.8
Red nucleus
nTPM: 51.0
1821 Female, age 72, unknown 53.5
2785 Male, age 18, unknown 52.9
2725 Female, age 75, unknown 52.2
1954 Female, age 42, unknown 51.9
2503 Female, age 72, unknown 51.9
2588 Male, age 74, left hemisphere 51.4
1865 Male, age 51, unknown 51.2
2823 Male, age 76, right hemisphere 50.6
1904 Male, age 53, unknown 50.1
2227 Male, age 72, unknown 49.4
2769 Male, age 72, unknown 48.8
2584 Male, age 75, left hemisphere 47.6
Substantia nigra
nTPM: 50.9
1889 Female, age 72, unknown 54.4
2241 Male, age 72, unknown 53.8
1941 Male, age 53, unknown 52.4
2409 Female, age 72, unknown 51.7
2590 Female, age 75, unknown 51.2
1916 Female, age 42, unknown 50.3
1851 Male, age 51, unknown 49.9
2665 Male, age 74, both hemispheres 48.7
2699 Male, age 18, unknown 48.5
2583 Male, age 75, right hemisphere 47.8
Superior colliculus
nTPM: 50.4
2587 Male, age 74, left hemisphere 53.2
2087 Female, age 72, unknown 52.2
2261 Male, age 18, unknown 50.9
1995 Male, age 72, unknown 50.6
1913 Female, age 42, unknown 50.3
1796 Male, age 53, unknown 50.1
1839 Male, age 51, unknown 49.9
2668 Female, age 75, unknown 49.7
1895 Male, age 76, right hemisphere 49.6
2664 Male, age 75, both hemispheres 47.1
Ventral tegmental area
nTPM: 50.1
2223 Female, age 72, unknown 52.2
2410 Female, age 72, unknown 50.8
1915 Female, age 42, unknown 50.2
1942 Male, age 51, unknown 49.7
2218 Male, age 76, both hemispheres 49.7
2021 Male, age 53, unknown 48.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.7
Samples: 139

Max nTPM: 108.4
Min nTPM: 40.0
Std nTPM: 10.2
Median nTPM: 55.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 108.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 86.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 76.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 73.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 73.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 73.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 72.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 72.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 72.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 71.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.8
FF:10158-103A5 76 years, female 79.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.2
Pig sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 46.3
Min nTPM: 33.6
Sample A Female 46.3
Sample B Female 33.6
Sample C Male 37.8
Sample D Male 35.0
Periaqueductal gray
nTPM: 28.0
Samples: 3

Max nTPM: 30.4
Min nTPM: 25.6
Sample B Female 28.1
Sample C Male 30.4
Sample D Male 25.6
Substantia nigra
nTPM: 33.4
Samples: 4

Max nTPM: 48.7
Min nTPM: 22.7
Sample A Female 48.7
Sample B Female 31.2
Sample C Male 30.8
Sample D Male 22.7
Superior colliculi
nTPM: 37.2
Samples: 4

Max nTPM: 47.7
Min nTPM: 29.9
Sample A Female 47.7
Sample B Female 29.9
Sample C Male 40.4
Sample D Male 30.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.5
Samples: 4

Max nTPM: 79.7
Min nTPM: 70.3
Sample A Male 76.6
Sample B Male 79.7
Sample C Female 71.4
Sample D Female 70.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
67767474 Antisense, RP_040916_02_C02, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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