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TRAPPC5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.9 nTPM
HPA:68.9 nTPM
GTEx:83.3 nTPM
FANTOM5:50.4 Scaled Tags Per Million
Pig:55.5 nTPM
Mouse:15.9 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.7
2219 Male, age 76, both hemispheres 67.1
2411 Female, age 72, unknown 66.3
2019 Male, age 18, unknown 63.1
2586 Male, age 75, left hemisphere 62.5
1827 Male, age 72, unknown 61.3
1833 Male, age 53, unknown 58.8
2828 Female, age 72, unknown 58.5
1830 Male, age 51, unknown 57.5
1870 Female, age 42, unknown 56.3
2666 Male, age 74, left hemisphere 55.3
Dorsal raphe nucleus
nTPM: 62.3
2298 Female, age 72, unknown 67.4
2047 Male, age 72, unknown 63.7
2750 Male, age 76, both hemispheres 63.4
1828 Male, age 53, unknown 60.9
2016 Female, age 72, unknown 55.9
Inferior colliculus
nTPM: 59.5
2097 Female, age 72, unknown 67.1
2849 Male, age 72, unknown 58.5
1848 Female, age 42, unknown 56.5
1890 Male, age 53, unknown 55.7
Median raphe nucleus
nTPM: 68.9
2220 Male, age 76, midline 68.9
Pedunculopontine tegmental nucleus
nTPM: 62.6
1921 Female, age 85, both hemispheres 65.0
2334 Male, age 80, both hemispheres 63.7
2338 Male, age 61, both hemispheres 59.3
Periaquaductal grey, anterior
nTPM: 64.7
1795 Male, age 51, unknown 67.0
1947 Male, age 18, unknown 63.9
2502 Female, age 75, unknown 63.3
Periaquaductal grey, dorsal
nTPM: 57.5
2850 Male, age 76, both hemispheres 58.6
1840 Male, age 53, unknown 58.2
1831 Male, age 72, unknown 57.6
2464 Female, age 72, unknown 55.8
Periaquaductal grey, lateral
nTPM: 61.5
2272 Male, age 74, both hemispheres 71.6
2140 Male, age 76, both hemispheres 56.9
2053 Male, age 18, unknown 56.0
Pretectal area
nTPM: 63.7
2007 Male, age 72, unknown 70.6
1817 Female, age 42, unknown 69.5
1816 Male, age 51, unknown 69.2
1944 Female, age 72, unknown 68.7
2273 Male, age 74, both hemispheres 66.6
2224 Female, age 72, unknown 66.0
1815 Male, age 53, unknown 63.7
2667 Female, age 75, unknown 62.2
2825 Male, age 18, unknown 58.7
2407 Male, age 75, both hemispheres 56.7
2316 Male, age 76, right hemisphere 48.9
Red nucleus
nTPM: 58.3
2725 Female, age 75, unknown 64.1
2785 Male, age 18, unknown 63.5
2503 Female, age 72, unknown 60.3
1904 Male, age 53, unknown 59.0
2769 Male, age 72, unknown 58.7
2227 Male, age 72, unknown 58.3
1954 Female, age 42, unknown 58.0
2584 Male, age 75, left hemisphere 57.7
1821 Female, age 72, unknown 57.4
1865 Male, age 51, unknown 55.9
2823 Male, age 76, right hemisphere 54.1
2588 Male, age 74, left hemisphere 52.6
Substantia nigra
nTPM: 63.7
1916 Female, age 42, unknown 74.9
1889 Female, age 72, unknown 70.3
1851 Male, age 51, unknown 66.7
1941 Male, age 53, unknown 65.8
2409 Female, age 72, unknown 63.3
2699 Male, age 18, unknown 62.5
2665 Male, age 74, both hemispheres 61.9
2241 Male, age 72, unknown 58.4
2583 Male, age 75, right hemisphere 57.4
2590 Female, age 75, unknown 55.7
Superior colliculus
nTPM: 61.1
1796 Male, age 53, unknown 68.8
2668 Female, age 75, unknown 65.2
2261 Male, age 18, unknown 64.0
2087 Female, age 72, unknown 61.6
2587 Male, age 74, left hemisphere 61.3
1839 Male, age 51, unknown 60.7
1913 Female, age 42, unknown 59.2
2664 Male, age 75, both hemispheres 58.0
1995 Male, age 72, unknown 56.9
1895 Male, age 76, right hemisphere 55.7
Ventral tegmental area
nTPM: 65.5
2218 Male, age 76, both hemispheres 71.1
2410 Female, age 72, unknown 70.4
1915 Female, age 42, unknown 68.1
2223 Female, age 72, unknown 63.2
1942 Male, age 51, unknown 60.5
2021 Male, age 53, unknown 59.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.3
Samples: 139

Max nTPM: 181.4
Min nTPM: 26.9
Std nTPM: 26.3
Median nTPM: 81.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 181.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 163.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 148.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 147.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 142.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 139.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 137.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 129.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 128.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 123.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 121.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.4
FF:10158-103A5 76 years, female 50.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.5
Pig sample Sample description nTPM
Midbrain
nTPM: 51.2
Samples: 4

Max nTPM: 68.0
Min nTPM: 41.1
Sample A Female 68.0
Sample B Female 47.0
Sample C Male 48.7
Sample D Male 41.1
Periaqueductal gray
nTPM: 36.1
Samples: 3

Max nTPM: 39.2
Min nTPM: 31.8
Sample B Female 37.4
Sample C Male 39.2
Sample D Male 31.8
Substantia nigra
nTPM: 45.5
Samples: 4

Max nTPM: 73.0
Min nTPM: 31.7
Sample A Female 73.0
Sample B Female 42.6
Sample C Male 34.5
Sample D Male 31.7
Superior colliculi
nTPM: 55.5
Samples: 4

Max nTPM: 76.8
Min nTPM: 44.6
Sample A Female 76.8
Sample B Female 47.4
Sample C Male 53.3
Sample D Male 44.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 17.5
Min nTPM: 14.7
Sample A Male 17.5
Sample B Male 14.7
Sample C Female 15.7
Sample D Female 15.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
68745372 Antisense, RP_050210_01_G11, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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