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PJA1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.7 nTPM
HPA:41.7 nTPM
GTEx:31.9 nTPM
FANTOM5:25.3 Scaled Tags Per Million
Pig:39.8 nTPM
Mouse:155.5 nTPM
Allen mouse:19.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.3
1870 Female, age 42, unknown 38.8
2411 Female, age 72, unknown 38.4
2219 Male, age 76, both hemispheres 38.2
1827 Male, age 72, unknown 37.6
1833 Male, age 53, unknown 37.3
2666 Male, age 74, left hemisphere 36.1
1830 Male, age 51, unknown 35.6
2828 Female, age 72, unknown 34.8
2586 Male, age 75, left hemisphere 33.4
2019 Male, age 18, unknown 32.8
Dorsal raphe nucleus
nTPM: 38.4
2298 Female, age 72, unknown 41.6
2047 Male, age 72, unknown 39.3
2750 Male, age 76, both hemispheres 38.6
1828 Male, age 53, unknown 37.0
2016 Female, age 72, unknown 35.3
Inferior colliculus
nTPM: 37.6
2849 Male, age 72, unknown 38.9
2097 Female, age 72, unknown 38.4
1848 Female, age 42, unknown 37.6
1890 Male, age 53, unknown 35.4
Median raphe nucleus
nTPM: 41.7
2220 Male, age 76, midline 41.7
Pedunculopontine tegmental nucleus
nTPM: 37.6
1921 Female, age 85, both hemispheres 39.5
2334 Male, age 80, both hemispheres 38.4
2338 Male, age 61, both hemispheres 34.9
Periaquaductal grey, anterior
nTPM: 37.1
1947 Male, age 18, unknown 38.8
1795 Male, age 51, unknown 37.0
2502 Female, age 75, unknown 35.4
Periaquaductal grey, dorsal
nTPM: 37.2
1840 Male, age 53, unknown 40.1
2850 Male, age 76, both hemispheres 36.9
2464 Female, age 72, unknown 36.0
1831 Male, age 72, unknown 35.7
Periaquaductal grey, lateral
nTPM: 36.5
2053 Male, age 18, unknown 37.3
2140 Male, age 76, both hemispheres 36.3
2272 Male, age 74, both hemispheres 35.8
Pretectal area
nTPM: 36.8
2224 Female, age 72, unknown 42.1
2825 Male, age 18, unknown 39.9
2667 Female, age 75, unknown 37.7
2273 Male, age 74, both hemispheres 37.3
2316 Male, age 76, right hemisphere 36.7
1816 Male, age 51, unknown 35.6
1815 Male, age 53, unknown 35.2
1944 Female, age 72, unknown 35.2
2007 Male, age 72, unknown 35.2
1817 Female, age 42, unknown 34.9
2407 Male, age 75, both hemispheres 34.9
Red nucleus
nTPM: 34.9
1821 Female, age 72, unknown 36.8
2725 Female, age 75, unknown 36.1
2227 Male, age 72, unknown 35.1
2503 Female, age 72, unknown 35.1
1954 Female, age 42, unknown 34.7
2769 Male, age 72, unknown 34.7
2584 Male, age 75, left hemisphere 34.6
2823 Male, age 76, right hemisphere 34.6
1904 Male, age 53, unknown 34.5
1865 Male, age 51, unknown 34.4
2588 Male, age 74, left hemisphere 34.3
2785 Male, age 18, unknown 33.3
Substantia nigra
nTPM: 37.0
2241 Male, age 72, unknown 40.5
1916 Female, age 42, unknown 40.4
2409 Female, age 72, unknown 38.9
1851 Male, age 51, unknown 37.4
2699 Male, age 18, unknown 36.7
1941 Male, age 53, unknown 36.5
1889 Female, age 72, unknown 36.4
2590 Female, age 75, unknown 35.2
2583 Male, age 75, right hemisphere 34.6
2665 Male, age 74, both hemispheres 33.5
Superior colliculus
nTPM: 35.8
1895 Male, age 76, right hemisphere 38.6
1796 Male, age 53, unknown 38.4
1839 Male, age 51, unknown 38.2
2668 Female, age 75, unknown 36.4
2261 Male, age 18, unknown 36.2
2587 Male, age 74, left hemisphere 35.5
2087 Female, age 72, unknown 34.9
1913 Female, age 42, unknown 33.6
2664 Male, age 75, both hemispheres 33.6
1995 Male, age 72, unknown 32.5
Ventral tegmental area
nTPM: 38.6
1915 Female, age 42, unknown 40.3
2223 Female, age 72, unknown 39.8
2410 Female, age 72, unknown 38.5
2218 Male, age 76, both hemispheres 38.3
1942 Male, age 51, unknown 37.4
2021 Male, age 53, unknown 37.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.9
Samples: 139

Max nTPM: 61.0
Min nTPM: 14.4
Std nTPM: 8.8
Median nTPM: 31.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 61.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 51.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 49.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 48.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 48.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 47.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 47.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 45.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.3
FF:10158-103A5 76 years, female 25.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.8
Pig sample Sample description nTPM
Midbrain
nTPM: 37.1
Samples: 4

Max nTPM: 48.6
Min nTPM: 30.1
Sample A Female 30.4
Sample B Female 30.1
Sample C Male 39.4
Sample D Male 48.6
Periaqueductal gray
nTPM: 36.3
Samples: 3

Max nTPM: 43.8
Min nTPM: 31.6
Sample B Female 33.4
Sample C Male 43.8
Sample D Male 31.6
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 42.0
Min nTPM: 18.3
Sample A Female 42.0
Sample B Female 25.9
Sample C Male 41.4
Sample D Male 18.3
Superior colliculi
nTPM: 39.8
Samples: 4

Max nTPM: 48.8
Min nTPM: 31.1
Sample A Female 48.8
Sample B Female 31.1
Sample C Male 39.4
Sample D Male 39.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 155.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 155.5
Samples: 4

Max nTPM: 158.9
Min nTPM: 153.2
Sample A Male 158.9
Sample B Male 153.2
Sample C Female 153.9
Sample D Female 156.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.5
74581229 Antisense, RP_060215_02_G12, Mouse strain C57BL/6J (56 days, male) 19.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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