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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:42.9 nTPM
HPA:42.9 nTPM
GTEx:38.7 nTPM
FANTOM5:120.5 Scaled Tags Per Million
Pig:34.9 nTPM
Mouse:64.0 nTPM
Allen mouse:8.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041802Antibody HPA054532
Glial cells LowNot detected
Neuronal cells MediumLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.9
Sample id Sample description nTPM
Hippocampus
nTPM: 41.7
2529 Female, age 94, left hemisphere 45.9
1911 Female, age 85, right hemisphere 43.6
1898 Male, age 80, left hemisphere 41.8
2148 Female, age 91, left hemisphere 40.4
1855 Male, age 76, left hemisphere 39.3
2621 Female, age 67, right hemisphere 39.0
Dentate gyrus
nTPM: 39.4
2010 Male, age 76, both hemispheres 41.1
2531 Female, age 67, both hemispheres 39.8
2246 Female, age 85, both hemispheres 39.6
1927 Female, age 91, both hemispheres 39.2
2528 Male, age 74, both hemispheres 38.9
2530 Female, age 94, left hemisphere 37.8
Entorhinal gyrus
nTPM: 39.7
2117 Female, age 91, right hemisphere 43.4
2764 Male, age 80, right hemisphere 40.9
1938 Female, age 85, left hemisphere 39.5
1787 Male, age 76, left hemisphere 38.9
2686 Male, age 75, right hemisphere 38.3
2613 Female, age 94, left hemisphere 37.2
Hippocampus, CA1
nTPM: 41.4
2749 Male, age 80, left hemisphere 45.8
2045 Male, age 76, both hemispheres 41.6
1873 Female, age 85, both hemispheres 41.0
2082 Female, age 91, right hemisphere 39.4
2527 Male, age 74, both hemispheres 39.1
Hippocampus, CA2
nTPM: 41.6
1963 Male, age 80, left hemisphere 43.8
2437 Female, age 94, left hemisphere 43.0
2249 Male, age 74, both hemispheres 42.5
1940 Female, age 85, left hemisphere 40.3
2113 Female, age 91, right hemisphere 40.2
1892 Male, age 76, both hemispheres 39.8
Hippocampus, CA3
nTPM: 40.7
2137 Male, age 80, left hemisphere 44.8
1891 Female, age 85, both hemispheres 44.6
1867 Male, age 76, both hemispheres 42.7
2436 Male, age 74, both hemispheres 40.9
2861 Female, age 67, both hemispheres 36.8
2620 Female, age 94, left hemisphere 34.6
Parahippocampal cortex
nTPM: 40.4
2018 Male, age 76, both hemispheres 43.1
2692 Male, age 74, both hemispheres 42.3
2622 Female, age 67, right hemisphere 42.2
1850 Male, age 80, both hemispheres 40.8
1933 Female, age 85, both hemispheres 40.8
1990 Female, age 91, right hemisphere 40.7
2245 Female, age 91, both hemispheres 40.0
2250 Female, age 67, right hemisphere 39.0
2693 Female, age 94, both hemispheres 38.0
2532 Female, age 72, left hemisphere 37.4
Perirhinal gyrus
nTPM: 38.9
1841 Female, age 85, right hemisphere 39.9
1794 Male, age 80, right hemisphere 39.6
2521 Female, age 94, right hemisphere 39.4
2848 Male, age 76, right hemisphere 38.0
1847 Female, age 91, left hemisphere 37.5
Subiculum
nTPM: 42.9
2438 Female, age 94, left hemisphere 48.9
1901 Male, age 80, both hemispheres 45.6
2042 Male, age 76, both hemispheres 44.3
2729 Female, age 91, right hemisphere 40.7
1977 Female, age 85, both hemispheres 39.6
2619 Male, age 74, both hemispheres 38.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.7
Samples: 197

Max nTPM: 72.5
Min nTPM: 18.7
Std nTPM: 8.0
Median nTPM: 38.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 72.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 69.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 61.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 59.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 56.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 55.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 55.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 53.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 52.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 51.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 51.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 120.5
FF:10169-103B7 60 years, female 131.8
FF:10153-102I9 76 years, female 109.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 34.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 34.9
Samples: 4

Max nTPM: 40.6
Min nTPM: 28.8
Sample A Female 40.6
Sample B Female 32.7
Sample C Male 37.6
Sample D Male 28.8
Entorhinal cortex
nTPM: 26.5
Samples: 4

Max nTPM: 30.9
Min nTPM: 21.8
Sample A Female 27.7
Sample B Female 30.9
Sample C Male 25.7
Sample D Male 21.8
Subiculum
nTPM: 27.8
Samples: 4

Max nTPM: 31.5
Min nTPM: 25.9
Sample A Female 31.5
Sample B Female 27.5
Sample C Male 25.9
Sample D Male 26.4
Ventral hippocampus
nTPM: 31.8
Samples: 4

Max nTPM: 37.1
Min nTPM: 26.4
Sample A Female 30.0
Sample B Female 26.4
Sample C Male 37.1
Sample D Male 33.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 64.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 56.9
Samples: 4

Max nTPM: 60.8
Min nTPM: 50.7
Sample A Male 50.7
Sample B Male 57.4
Sample C Female 58.6
Sample D Female 60.8
Hippocampal formation
nTPM: 64.0
Samples: 4

Max nTPM: 66.4
Min nTPM: 60.9
Sample A Male 65.9
Sample B Male 62.8
Sample C Female 66.4
Sample D Female 60.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.9
76098327 Antisense, RP_060626_01_E11, Mouse strain C57BL/6J (56 days, male) 8.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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