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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.7 nTPM
HPA:49.7 nTPM
GTEx:40.0 nTPM
FANTOM5:143.5 Scaled Tags Per Million
Pig:36.5 nTPM
Mouse:62.0 nTPM
Allen mouse:5.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA054532
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 49.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.0
2481 Female, age 94, left hemisphere 46.9
2288 Male, age 75, left hemisphere 43.8
2289 Male, age 61, right hemisphere 41.7
2846 Female, age 79, unknown 41.5
1781 Male, age 74, unknown 41.3
1857 Female, age 85, left hemisphere 40.8
1854 Male, age 80, left hemisphere 40.6
2290 Female, age 72, unknown 39.4
Claustrum
nTPM: 42.4
2292 Female, age 85, both hemispheres 46.3
1956 Male, age 74, unknown 45.7
2491 Male, age 75, both hemispheres 43.4
2198 Male, age 80, both hemispheres 42.6
2392 Female, age 94, both hemispheres 41.9
2196 Female, age 79, unknown 41.2
2645 Female, age 72, unknown 40.9
2568 Male, age 61, both hemispheres 40.4
2284 Female, age 91, both hemispheres 39.0
Globus pallidus, externus
nTPM: 49.7
2772 Female, age 79, unknown 52.5
1996 Male, age 80, right hemisphere 51.3
2567 Female, age 72, unknown 49.1
2395 Male, age 75, both hemispheres 48.7
2646 Male, age 61, right hemisphere 47.1
Globus pallidus, internus
nTPM: 49.4
2287 Male, age 75, right hemisphere 52.1
2778 Female, age 91, both hemispheres 50.9
2111 Female, age 85, right hemisphere 50.0
1818 Male, age 74, unknown 49.6
2037 Male, age 80, right hemisphere 49.4
2483 Female, age 94, right hemisphere 48.0
2566 Female, age 72, unknown 46.0
Nucleus accumbens
nTPM: 41.5
2391 Female, age 94, left hemisphere 45.7
2286 Male, age 75, left hemisphere 44.8
2824 Male, age 61, right hemisphere 42.2
2732 Male, age 80, right hemisphere 41.0
1806 Female, age 85, left hemisphere 40.4
1783 Male, age 74, unknown 39.7
1856 Female, age 91, right hemisphere 39.5
2698 Female, age 72, unknown 39.1
Nucleus basalis of Meynert
nTPM: 41.0
2569 Male, age 61, both hemispheres 44.1
2821 Male, age 75, both hemispheres 40.7
2484 Female, age 94, left hemisphere 39.9
2393 Male, age 80, right hemisphere 39.5
Nucleus of the diagonal band
nTPM: 39.4
2775 Male, age 80, right hemisphere 41.5
1979 Male, age 74, unknown 40.7
2195 Female, age 85, both hemispheres 39.1
1812 Female, age 91, both hemispheres 38.8
2029 Male, age 61, right hemisphere 36.8
Olfactory tubercle
nTPM: 38.9
1846 Male, age 80, right hemisphere 39.6
2856 Male, age 75, right hemisphere 39.1
1998 Female, age 91, both hemispheres 38.5
2487 Female, age 94, left hemisphere 38.3
Putamen
nTPM: 41.8
2482 Female, age 94, left hemisphere 46.1
1829 Male, age 74, unknown 42.6
2647 Male, age 75, left hemisphere 42.5
1937 Female, age 91, right hemisphere 42.1
2466 Female, age 79, unknown 40.2
2489 Female, age 72, unknown 40.2
1838 Male, age 80, right hemisphere 38.9
Septal nuclei
nTPM: 38.5
2031 Female, age 72, unknown 40.6
2629 Female, age 94, right hemisphere 39.6
1960 Male, age 74, unknown 39.1
2199 Male, age 80, right hemisphere 38.7
2009 Female, age 91, both hemispheres 37.9
2394 Male, age 61, left hemisphere 37.8
2059 Female, age 85, both hemispheres 35.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.0
Samples: 246

Max nTPM: 54.9
Min nTPM: 23.1
Std nTPM: 6.0
Median nTPM: 37.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 54.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 54.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 53.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 53.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 52.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 52.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 51.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 51.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 50.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 50.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 49.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.8
Samples: 246

Max nTPM: 75.2
Min nTPM: 9.7
Std nTPM: 7.0
Median nTPM: 34.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 75.2
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 56.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 56.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 53.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 52.6
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 50.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 49.7
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 49.6
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 48.9
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 48.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 48.0
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Brain - Putamen (basal ganglia)
Average nTPM: 40.0
Samples: 205

Max nTPM: 79.1
Min nTPM: 25.6
Std nTPM: 6.9
Median nTPM: 39.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 79.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 63.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 58.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 57.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 55.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 54.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 53.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 52.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 52.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 52.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 52.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 112.2
FF:10164-103B2 76 years, female 112.2
Globus pallidus
Scaled Tags Per Million: 143.5
FF:10161-103A8 76 years, female 147.4
FF:10175-103C4 60 years, female 139.7
Nucleus accumbens
Scaled Tags Per Million: 104.9
FF:10037-101F1 23-56 years, mixed 104.9
Putamen
Scaled Tags Per Million: 116.2
FF:10176-103C5 60 years, female 116.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 36.5
Pig sample Sample description nTPM
Caudate
nTPM: 28.9
Samples: 4

Max nTPM: 30.9
Min nTPM: 27.0
Sample A Female 28.3
Sample B Female 29.2
Sample C Male 30.9
Sample D Male 27.0
Putamen
nTPM: 36.0
Samples: 4

Max nTPM: 42.8
Min nTPM: 28.2
Sample A Female 42.8
Sample B Female 28.2
Sample C Male 35.8
Sample D Male 37.2
Septum
nTPM: 34.6
Samples: 4

Max nTPM: 37.7
Min nTPM: 31.2
Sample A Female 35.6
Sample B Female 31.2
Sample C Male 37.7
Sample D Male 33.9
Ventral pallidum
nTPM: 36.5
Samples: 4

Max nTPM: 39.9
Min nTPM: 28.8
Sample A Female 28.8
Sample B Female 37.7
Sample C Male 39.9
Sample D Male 39.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 62.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 59.0
Samples: 4

Max nTPM: 65.3
Min nTPM: 54.6
Sample A Male 56.6
Sample B Male 54.6
Sample C Female 65.3
Sample D Female 59.6
Septum
nTPM: 62.0
Samples: 4

Max nTPM: 65.7
Min nTPM: 58.7
Sample A Male 58.7
Sample B Male 62.0
Sample C Female 65.7
Sample D Female 61.5
Ventral forebrain
nTPM: 60.7
Samples: 4

Max nTPM: 63.4
Min nTPM: 56.6
Sample A Male 56.6
Sample B Male 60.1
Sample C Female 62.5
Sample D Female 63.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.8
76098327 Antisense, RP_060626_01_E11, Mouse strain C57BL/6J (56 days, male) 5.8
Pallidum
Expression energy: 5.0
76098327 Antisense, RP_060626_01_E11, Mouse strain C57BL/6J (56 days, male) 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.